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JAL-3683 retrieve job status to output stream
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
2020-02-04
MMWarowny
JAL-3515 Extract core WSDiscoverer methods to a separat...
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commitdiff
2019-10-03
Jim Procter
JAL-3070 slivka service discovery as a background threa...
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diff to current
2019-09-23
Jim Procter
JAL-3066 JAL-3070 pull up non-jabaws specific service...
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diff to current
2019-09-05
Mateusz Warowny
JAL-3066 Implement clustaloWS using slivka system.
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diff to current
2019-07-15
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
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diff to current
2019-07-12
Thomas
JAL-2629 add sort by evalue and bit score
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diff to current
2019-07-11
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
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diff to current
2019-07-10
Jim Procter
Merge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
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diff to current
2019-07-10
tva
JAL-2629 fix incorrect hmmbuild on groups behaviour
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commitdiff
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diff to current
2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
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diff to current
2019-07-03
tva
JAL-2629 can now filter by sequence e-value or bit...
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commitdiff
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diff to current
2019-07-02
tva
JAL-2629 add simple jackhmmer functionality
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commitdiff
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diff to current
2019-06-24
Jim Procter
JAL-3330 merge styles onto originating view after fetch...
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diff to current
2019-06-04
Jim Procter
Merge branch 'develop' into developtomchmmer
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diff to current
2019-05-28
Ben Soares
JAL-1988 Some TEST code accidentally left in now remove...
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diff to current
2019-04-11
Jim Procter
Merge branch 'develop' into task/JAL-3130_Java_11_inves...
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diff to current
2019-03-23
gmungoc
JAL-1889 explicit recalc of geometry for scale left...
bug/JAL-1889serverTestSuite
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diff to current
2019-03-20
Ben Soares
JAL-3130 Lots of deprecation fixes. See utils/deprecat...
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diff to current
2019-03-20
gmungoc
JAL-3093 fine tuning of SeqPanel tooltip
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diff to current
2019-03-19
Ben Soares
JAL-3130 Merge of JAL-3130_Java_11_investigations-Ben...
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diff to current
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
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diff to current
2019-03-07
gmungoc
Merge branch 'feature/JAL-3180colourAnnotationMenu...
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diff to current
2019-03-07
gmungoc
JAL-2250 default Apply Colour to All Groups selected
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diff to current
2019-03-05
gmungoc
Merge remote-tracking branch 'origin/features/JAL-2620a...
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2019-03-04
gmungoc
Merge branch 'bug/JAL-3099alignmentVisibleWidth' into...
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2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
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2019-03-01
gmungoc
Merge branch 'bug/JAL-3158selectionBroadcasts' into...
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2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
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2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
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2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without dupli...
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2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
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2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
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commitdiff
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diff to current
2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
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commitdiff
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diff to current
2018-12-14
Ben Soares
JAL-3130 single class testing on CLI with ant [ -Dclass...
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2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
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2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
bug/JAL-3158selectionBroadcasts
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2018-11-05
Ben Soares
JAL-1988 Investigating...
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2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
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2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
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2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
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2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
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2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
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diff to current
2018-09-18
gmungoc
JAL-3063 New View via JAXB
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2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
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2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
bug/JAL-3097blankExtraColumns
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diff to current
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
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2018-08-06
Jim Procter
JAL-3070 TODO for mateusz
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2018-07-23
Jim Procter
Merge branch 'features/mchmmer' into merge/wsinterfaces...
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2018-07-20
Jim Procter
JAL-3070 core service descriptors for JABAWS services...
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2018-05-28
gmungoc
Merge branch 'develop' into features/mchmmer
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diff to current
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
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2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
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2018-05-22
gmungoc
JAL-2629 method refactor and menu tidying
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diff to current
2018-05-15
gmungoc
JAL-1264 exclude score-only from 'Add Reference Annotat...
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2018-05-14
gmungoc
JAL-2711 show short file names in search database combo box
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2018-05-10
gmungoc
JAL-2629 handle decline 'Add Database'
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diff to current
2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
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2018-04-24
gmungoc
JAL-2616 unused field removed
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2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
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diff to current
2018-04-16
gmungoc
JAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe...
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2018-03-30
gmungoc
JAL-2629 combine with/without defaults in one method...
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diff to current
2018-03-26
gmungoc
JAL-2939 unused action handler methods removed
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commitdiff
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diff to current
2018-03-21
gmungoc
JAL-2629 tweaks to Information annotation updating
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diff to current
2018-03-16
gmungoc
JAL-2620 alternative genetic code translation tables
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diff to current
2018-03-16
gmungoc
Merge branch 'develop' into features/mchmmer
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diff to current
2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
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diff to current
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
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diff to current
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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commitdiff
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diff to current
2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
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diff to current
2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
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2018-02-21
gmungoc
JAL-2629 simplifying method signatures in Hmmer command...
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diff to current
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
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commitdiff
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diff to current
2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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commitdiff
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diff to current
2018-02-19
gmungoc
JAL-2629 refactoring of Hmmer preferences
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commitdiff
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diff to current
2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
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2018-01-15
kiramt
JAL-2759 Refactor of hideInsertionsFor after review
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2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
bug/JAL-2865removeGC
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diff to current
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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diff to current
2017-12-08
gmungoc
JAL-2843 refactor / tidy for feature filter input/output
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2017-12-04
gmungoc
JAL-2850 JAL-1766 option to load contig sequence refere...
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2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
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2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
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diff to current
2017-10-27
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-10-26
Jim Procter
Merge branch 'feature/JAL-2488finalize' into develop
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2017-10-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2017-10-25
Jim Procter
Merge branch 'bug/JAL-2727closeAllFreeMemory' into...
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2017-10-24
gmungoc
JAL-2738 update spike branch with latest
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diff to current
2017-10-24
gmungoc
Merge branch 'develop' into features/JAL-1793VCF; lambd...
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diff to current
2017-10-20
gmungoc
Push 1793 latest to spike branch
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diff to current
2017-10-19
gmungoc
JAL-2755 find gene loci for fetched xrefs where possible
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diff to current
2017-10-12
Jim Procter
JAL-2773 add new flag to paintAlignment(updateOverview...
features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
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diff to current
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
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diff to current
2017-09-26
kiramt
JAL-2674 more List<int[]> -> HiddenColumns copy changes
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commitdiff
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diff to current
2017-09-26
kiramt
JAL-2674 Changes to pasting
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diff to current
2017-09-22
gmungoc
JAL-2738 correct handling of reverse strand genes
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diff to current
2017-09-21
gmungoc
JAL-2738 PoC of Load VCF file on to gene sequence
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diff to current
2017-09-12
gmungoc
JAL-2727 ensure ViewportRanges (and gapcounts) are...
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diff to current
2017-09-01
gmungoc
JAL-2488 remove finalize methods
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