JAL-3130 incorporating feature/JAL-3063jaxbNoCastor and new script utils/jdeps_jlink_...
authorBen Soares <bsoares@dundee.ac.uk>
Thu, 6 Dec 2018 16:29:24 +0000 (16:29 +0000)
committerBen Soares <bsoares@dundee.ac.uk>
Thu, 6 Dec 2018 16:29:24 +0000 (16:29 +0000)
commit4d64932654de3f6ffe07db11d18f2d21f558c6e6
tree8034e8f076393fbe9643a7188a3764e4728a1e10
parent382f5ff058a4c2fed1e9874bb712b40f16ec1a4e
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor and new script utils/jdeps_jlink_all.sh which works out module dependencies (not as straightforward as it should be) and makes a java 11 JRE
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j11mod/tmp/com/sun/xml/ws/resources/encoding_it.properties [new file with mode: 0644]
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j11mod/tmp/com/sun/xml/ws/resources/encoding_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/encoding_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/encoding_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/encoding_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/handler_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/httpserver_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/management_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/modeler_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/policy_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/providerApi_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/sender_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/server_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/soap_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/streaming_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/tubelineassembly.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/util_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsdlmodel_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/wsservlet_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/resources/xmlmessage_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_de.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_es.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_fr.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_it.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_ja.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_ko.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_pt_BR.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_zh_CN.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/resources/Messages_en_zh_TW.properties [new file with mode: 0644]
j11mod/tmp/com/sun/xml/ws/util/version.properties [new file with mode: 0644]
j11mod/tmp/jaxws-databinding-translate-namespaces.xml [new file with mode: 0644]
j11mod/tmp/jaxws-databinding.xsd [new file with mode: 0644]
j11mod/txw2.jar [moved from j11lib/txw2.jar with 100% similarity]
j11mod/wsdl4j-MODULE.jar [new file with mode: 0644]
lib/activation.jar [deleted file]
lib/castor-1.1-cycle-xml.jar [deleted file]
lib/jsr311-api-1.1.1.jar [deleted file]
lib/mail-MODULE.jar [new file with mode: 0644]
lib/mail.jar [deleted file]
lib/servlet-api-3.1.jar [deleted file]
lib/wsdl4j.jar [deleted file]
lib/xml-apis.jar [deleted file]
modules
resources/embl_mapping.xml [deleted file]
resources/uniprot_mapping.xml [deleted file]
schemas/JalviewUserColours.xsd
schemas/JalviewWsParamSet.xsd
schemas/castor-mapping.xsd [deleted file]
schemas/embl.xsd [new file with mode: 0644]
schemas/embl_bindings.xml [new file with mode: 0644]
schemas/jalview.xsd
schemas/uniprot.xsd [new file with mode: 0644]
schemas/vamsas.xsd
src/castor.properties [deleted file]
src/jalview/binding/Alignment.java [deleted file]
src/jalview/binding/Annotation.java [deleted file]
src/jalview/binding/AnnotationElement.java [deleted file]
src/jalview/binding/Colour.java [deleted file]
src/jalview/binding/CompoundMatcher.java [deleted file]
src/jalview/binding/Feature.java [deleted file]
src/jalview/binding/FeatureMatcher.java [deleted file]
src/jalview/binding/FeatureMatcherSet.java [deleted file]
src/jalview/binding/FeatureSettings.java [deleted file]
src/jalview/binding/Features.java [deleted file]
src/jalview/binding/Filter.java [deleted file]
src/jalview/binding/JGroup.java [deleted file]
src/jalview/binding/JSeq.java [deleted file]
src/jalview/binding/JalviewModel.java [deleted file]
src/jalview/binding/JalviewModelSequence.java [deleted file]
src/jalview/binding/JalviewUserColours.java [deleted file]
src/jalview/binding/MatchCondition.java [deleted file]
src/jalview/binding/MatcherSet.java [deleted file]
src/jalview/binding/Pdbentry.java [deleted file]
src/jalview/binding/PdbentryItem.java [deleted file]
src/jalview/binding/Pdbids.java [deleted file]
src/jalview/binding/Property.java [deleted file]
src/jalview/binding/Sequence.java [deleted file]
src/jalview/binding/SequenceSet.java [deleted file]
src/jalview/binding/SequenceType.java [deleted file]
src/jalview/binding/Setting.java [deleted file]
src/jalview/binding/Tree.java [deleted file]
src/jalview/binding/UserColourScheme.java [deleted file]
src/jalview/binding/UserColours.java [deleted file]
src/jalview/binding/VAMSAS.java [deleted file]
src/jalview/binding/VamsasModel.java [deleted file]
src/jalview/binding/Viewport.java [deleted file]
src/jalview/binding/types/ColourThreshTypeType.java [deleted file]
src/jalview/binding/types/FeatureMatcherByType.java [deleted file]
src/jalview/binding/types/NoValueColour.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblEntry.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblError.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblFeature.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblFile.java [deleted file]
src/jalview/datamodel/xdb/embl/EmblSequence.java [deleted file]
src/jalview/datamodel/xdb/embl/Qualifier.java [deleted file]
src/jalview/datamodel/xdb/uniprot/UniprotEntry.java [deleted file]
src/jalview/datamodel/xdb/uniprot/UniprotFeature.java [deleted file]
src/jalview/datamodel/xdb/uniprot/UniprotFile.java [deleted file]
src/jalview/datamodel/xdb/uniprot/UniprotProteinName.java [deleted file]
src/jalview/datamodel/xdb/uniprot/UniprotSequence.java [deleted file]
src/jalview/gui/AlignFrame.java
src/jalview/gui/AlignViewport.java
src/jalview/gui/AlignmentPanel.java
src/jalview/gui/CalculationChooser.java
src/jalview/gui/Desktop.java
src/jalview/gui/FeatureSettings.java
src/jalview/gui/FontChooser.java
src/jalview/gui/Jalview2XML.java [deleted file]
src/jalview/gui/Jalview2XML_V1.java [deleted file]
src/jalview/gui/PCAPanel.java
src/jalview/gui/SplitFrame.java
src/jalview/gui/TreeCanvas.java
src/jalview/gui/TreePanel.java
src/jalview/gui/UserDefinedColours.java
src/jalview/gui/VamsasApplication.java
src/jalview/gui/WsParamSetManager.java
src/jalview/io/FileLoader.java
src/jalview/io/VamsasAppDatastore.java
src/jalview/jbgui/GDesktop.java
src/jalview/project/Jalview2XML.java [new file with mode: 0644]
src/jalview/schemabinding/version2/.castor.cdr [deleted file]
src/jalview/schemabinding/version2/AlcodMap.java [deleted file]
src/jalview/schemabinding/version2/Alcodon.java [deleted file]
src/jalview/schemabinding/version2/AlcodonFrame.java [deleted file]
src/jalview/schemabinding/version2/Annotation.java [deleted file]
src/jalview/schemabinding/version2/AnnotationColourScheme.java [deleted file]
src/jalview/schemabinding/version2/AnnotationColours.java [deleted file]
src/jalview/schemabinding/version2/AnnotationElement.java [deleted file]
src/jalview/schemabinding/version2/CalcIdParam.java [deleted file]
src/jalview/schemabinding/version2/Colour.java [deleted file]
src/jalview/schemabinding/version2/CompoundMatcher.java [deleted file]
src/jalview/schemabinding/version2/DBRef.java [deleted file]
src/jalview/schemabinding/version2/Feature.java [deleted file]
src/jalview/schemabinding/version2/FeatureMatcher.java [deleted file]
src/jalview/schemabinding/version2/FeatureMatcherSet.java [deleted file]
src/jalview/schemabinding/version2/FeatureSettings.java [deleted file]
src/jalview/schemabinding/version2/Features.java [deleted file]
src/jalview/schemabinding/version2/Filter.java [deleted file]
src/jalview/schemabinding/version2/Group.java [deleted file]
src/jalview/schemabinding/version2/HiddenColumns.java [deleted file]
src/jalview/schemabinding/version2/JGroup.java [deleted file]
src/jalview/schemabinding/version2/JSeq.java [deleted file]
src/jalview/schemabinding/version2/JalviewModel.java [deleted file]
src/jalview/schemabinding/version2/JalviewModelSequence.java [deleted file]
src/jalview/schemabinding/version2/JalviewUserColours.java [deleted file]
src/jalview/schemabinding/version2/MapListFrom.java [deleted file]
src/jalview/schemabinding/version2/MapListTo.java [deleted file]
src/jalview/schemabinding/version2/MapListType.java [deleted file]
src/jalview/schemabinding/version2/Mapping.java [deleted file]
src/jalview/schemabinding/version2/MappingChoice.java [deleted file]
src/jalview/schemabinding/version2/MatchCondition.java [deleted file]
src/jalview/schemabinding/version2/MatcherSet.java [deleted file]
src/jalview/schemabinding/version2/OtherData.java [deleted file]
src/jalview/schemabinding/version2/Pdbentry.java [deleted file]
src/jalview/schemabinding/version2/PdbentryItem.java [deleted file]
src/jalview/schemabinding/version2/Pdbids.java [deleted file]
src/jalview/schemabinding/version2/Property.java [deleted file]
src/jalview/schemabinding/version2/RnaViewer.java [deleted file]
src/jalview/schemabinding/version2/SecondaryStructure.java [deleted file]
src/jalview/schemabinding/version2/Sequence.java [deleted file]
src/jalview/schemabinding/version2/SequenceSet.java [deleted file]
src/jalview/schemabinding/version2/SequenceSetProperties.java [deleted file]
src/jalview/schemabinding/version2/SequenceType.java [deleted file]
src/jalview/schemabinding/version2/Setting.java [deleted file]
src/jalview/schemabinding/version2/StructureState.java [deleted file]
src/jalview/schemabinding/version2/ThresholdLine.java [deleted file]
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