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Merge branch 'releases/Release_2_11_4_Branch'
[jalview.git]
/
src
/
jalview
/
gui
/ AlignFrame.java
2017-02-09
gmungoc
JAL-1608 menu entry text; enable/disable Create/Remove...
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commitdiff
2017-01-31
gmungoc
JAL-2371 rename global/viewportColourScheme to residueS...
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commitdiff
2017-01-31
gmungoc
JAL-2385 more tests/bug fixes mostly for gui.SliderPane...
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commitdiff
2017-01-23
gmungoc
JAL-2386 unit tests for change colour (and minor refact...
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commitdiff
2017-01-23
gmungoc
JAL-2386 simplify changeColour (doesn't change colour...
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commitdiff
2017-01-20
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
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commitdiff
2017-01-20
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
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commitdiff
2017-01-19
gmungoc
JAL-2383 restore PID colour threshold from project...
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commitdiff
2017-01-17
gmungoc
Merge branch 'features/JAL-2360colourSchemeApplicabilit...
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commitdiff
2017-01-17
gmungoc
Merge branch 'develop' into features/JAL-2360colourSche...
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commitdiff
2017-01-11
gmungoc
JAL-2344 FileFormats singleton for formats, FileFormatI...
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commitdiff
2017-01-04
gmungoc
JAL-2371 CollectionColourScheme wraps ColourSchemeI
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commitdiff
2016-12-22
gmungoc
JAL-2360 structure viewers now using ColourMenuHelper...
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commitdiff
2016-12-21
gmungoc
JAL-2360 ColourMenuHelper now builds and selects items...
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commitdiff
2016-12-20
gmungoc
JAL-2360 testRegisterColourScheme to demonstrate a...
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commitdiff
2016-12-20
gmungoc
JAL-2360 ColourSchemes holds configured schemes, AlignF...
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commitdiff
2016-12-19
gmungoc
JAL-2361 select colour menu item by matching its name...
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commitdiff
2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
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commitdiff
2016-12-12
gmungoc
JAL-2361 extract methods to (re-)build colour menu
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commitdiff
2016-12-09
gmungoc
JAL-1895 suppress RNA interaction colour option
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commitdiff
2016-12-07
gmungoc
JAL-2344 handle null format, simplify JalviewFileChoose...
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commitdiff
2016-11-29
gmungoc
JAL-2344 FileFormat.isStructureFile replaces
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commitdiff
2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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commitdiff
2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
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commitdiff
2016-11-24
gmungoc
Further tweaks to get tests passing
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commitdiff
2016-11-24
gmungoc
FileFormatI further tweaks, clean compile
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commitdiff
2016-11-22
Jim Procter
Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...
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commitdiff
2016-11-22
Jim Procter
JAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...
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commitdiff
2016-11-14
tcofoegbu
JAL-2322 Refactored unified architecture for data ...
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commitdiff
2016-11-11
tcofoegbu
JAL-2277 Refactored out duplicated method - printUnwrap...
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commitdiff
2016-11-02
Jim Procter
JAL-345 JAL-1738 menu item, AlignFrame action listener...
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commitdiff
2016-11-01
tcofoegbu
JAL-2280 refactored and improved structure file identif...
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commitdiff
2016-10-28
Jim Procter
JAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
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commitdiff
2016-10-27
tcofoegbu
JAL-2280 Improvement to enable drag'n'drop association...
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commitdiff
2016-10-26
tcofoegbu
JAL-2284 basic support for exporting BioJS MSA viewer...
features/JAL-2284_export-biojsmsa-via-cli
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commitdiff
2016-10-25
Jim Procter
JAL-2089 patch broken merge to master for Release 2...
releases/Release_2_10_0_Branch
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commitdiff
2016-10-24
Jim Procter
Merge branch 'releases/Release_2_10_0_Branch'
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commitdiff
2016-10-17
kiramt
acceptDrop call added before getTransferable in alignme...
bug/JAL-1552dragndroptake2
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commitdiff
2016-10-06
Jim Procter
JAL-2089 Merge branch releases/Release_2_10_Branch...
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commitdiff
2016-10-05
Jim Procter
JAL-2189 source formatting
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commitdiff
2016-09-19
gmungoc
JAL-2172 test and code updates for readonly selection...
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commitdiff
2016-09-07
Jim Procter
Merge branch 'develop' into bug/JAL-1803_JAL-2157
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commitdiff
2016-08-31
gmungoc
JAL-2077 test isPopupTrigger in mouseReleased or mouseC...
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commitdiff
2016-08-31
Jim Procter
JAL-2157 JAL-2154 simplify CanshowProducts code to...
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commitdiff
2016-08-30
gmungoc
Merge branch 'develop' into features/filetypeEnum
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commitdiff
2016-08-25
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
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commitdiff
2016-08-24
gmungoc
JAL-1424 tidy / recode MessageManager calls to support...
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commitdiff
2016-08-23
gmungoc
JAL-2176 unused field / methods removed
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commitdiff
2016-08-18
gmungoc
JAL-1693 show warning dialog if unable to make CDS...
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commitdiff
2016-08-13
Jim Procter
JAL-2154 refactor CrossRef UI code to its own class
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commitdiff
2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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commitdiff
2016-07-29
Jim Procter
JAL-2164 JAL-1772 explodeViews can be static, so make...
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commitdiff
2016-07-19
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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commitdiff
2016-07-18
Jim Procter
JAL-2145 JAL-1551 formatting
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commitdiff
2016-07-18
Jim Procter
JAL-2145 fix: build alignments before building AlignFra...
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commitdiff
2016-07-12
gmungoc
FileFormat enum wip changes
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commitdiff
2016-07-12
Jim Procter
JAL-2144 TODO - new methods for canonicalisation and...
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commitdiff
2016-07-12
Jim Procter
JAL-2110 avoid potential race condition where user...
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commitdiff
2016-07-12
Jim Procter
JAL-2110 TODO for JAL-2131
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commitdiff
2016-07-11
gmungoc
file format enum wip changes
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commitdiff
2016-07-06
gmungoc
JAL-2110 cross-refs from protein to show cds not non...
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared dataset when copying alignment...
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commitdiff
2016-07-04
gmungoc
Revert "JAL-2110 use shared alignment dataset when...
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commitdiff
2016-07-04
gmungoc
JAL-2110 use shared alignment dataset when copying...
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commitdiff
2016-07-01
gmungoc
JAL-2110 bug fixing and tidying for get cross-refs
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commitdiff
2016-07-01
gmungoc
JAL-2110 add 'products' parameter to filter results...
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commitdiff
2016-06-23
Jim Procter
Merge branch 'develop' into merge_JAL-2110
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commitdiff
2016-06-22
gmungoc
JAL-1982 defensive test for null array of annotations
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commitdiff
2016-06-22
Jim Procter
JAL-2110 remove hardwired detection of search context...
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commitdiff
2016-06-21
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
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2016-06-20
Jim Procter
Merge branch 'develop' into features/JAL-1812_JAL-2083_...
features/JAL-1812_JAL-2083_groovyBinding
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commitdiff
2016-06-14
gmungoc
JAL-2110 fixes to dbref resolution and mappings, use...
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commitdiff
2016-06-09
gmungoc
JAL-2110 work in progress
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commitdiff
2016-06-09
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
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commitdiff
2016-06-06
tcofoegbu
JAL-1944 bugfix for wrong alignment numbering when...
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commitdiff
2016-06-03
gmungoc
JAL-2110 random stuff
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commitdiff
2016-06-02
gmungoc
Merge branch 'develop' into features/JAL-2110_makeSense...
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commitdiff
2016-06-01
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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commitdiff
2016-06-01
tcofoegbu
JAL-1944 updated bugfix implementation
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commitdiff
2016-06-01
gmungoc
JAL-1424 utility to check resource bundle labels used...
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commitdiff
2016-05-31
tcofoegbu
merge
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commitdiff
2016-05-31
tcofoegbu
JAL-1944 fix for visible seqs sometimes been replaced...
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commitdiff
2016-05-31
gmungoc
JAL-2023 adjustments to mappings added for split frame...
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commitdiff
2016-05-30
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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commitdiff
2016-05-26
gmungoc
JAL-391 add reverse / complement to command history...
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commitdiff
2016-05-26
Jim Procter
JAL-1551 formatting
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commitdiff
2016-05-26
Jim Procter
JAL-1552 refactor shared dataflavor hander
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commitdiff
2016-05-26
Jim Procter
JAL-1552 extra debug logging for dataflavor if drop...
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commitdiff
2016-05-25
Jim Procter
JAL-1522 patch - try to pick best text dataflavor
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commitdiff
2016-05-20
gmungoc
JAL-2110 unit tests for and minor refactoring of CrossRef
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commitdiff
2016-05-03
gmungoc
JAL-2050 hide introns also when fetching Ensembl xrefs...
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commitdiff
2016-05-02
gmungoc
JAL-1812 bind Groovy to Jalview rather than Desktop...
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commitdiff
2016-04-28
gmungoc
JAL-2083 removed use of reflection for Groovy
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commitdiff
2016-04-24
Jim Procter
JAL-2077 - reinstate popups on osx
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commitdiff
2016-04-24
Jim Procter
JAL-2075 make GroovyConsole a singleton so tests requir...
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commitdiff
2016-04-22
gmungoc
JAL-1812 JAL-2068 add Run Groovy Script to AlignFrame...
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commitdiff
2016-04-20
Jim Procter
fix for JAL-2072
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commitdiff
2016-04-11
tcofoegbu
JAL-2054 Renamed getStartEnd in AlignFrame to getVisibl...
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