update author list in license for (JAL-826)
[jalview.git] / src / jalview / gui / AlignFrame.java
2007-04-19 amwaterhouseOnly setDropTarget if Desktop is not null
2007-04-17 jprocterpaste adds or creates full copies of objects in clipboa...
2007-04-13 amwaterhouseFeatureRenderer takes alignmentPanel
2007-04-12 amwaterhouseNumber pad keys can be used in cursor mode
2007-04-02 amwaterhouseAllow for scroll bar height
2007-04-02 amwaterhousedestroy destroyed
2007-04-02 amwaterhousedestroy destroyed
2007-04-02 amwaterhouseDestroy Alignment when closing frame
2007-03-22 amwaterhouseSet gatherViewsHere false when making a new tab
2007-03-19 jproctertranslate aligned cDNA to aligned peptide
2007-02-27 amwaterhouseUse paintAlignment
2007-02-12 amwaterhouseReload jar files
2007-02-09 jprocteradded 'show overview' preference.
2007-02-07 amwaterhouseFormatting
2007-02-07 amwaterhousereload, just close this frame and open a new one
2007-01-31 amwaterhouseCan edit annotation name/description
2007-01-31 amwaterhouseDont export annotations if not visible
2007-01-30 amwaterhouseOutput groups in annotation file
2007-01-29 amwaterhousescaleAbove, left and right set when tab selection changes
2007-01-25 amwaterhouseAnnotations move when full alignment edited
2007-01-24 amwaterhousePage setup added
2007-01-23 amwaterhouseboolean for internal copies
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-19 amwaterhouseNeeed to know protocol for annotation loading
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[]
2007-01-04 amwaterhouseSend new sequences when firing alignment changed
2006-11-30 amwaterhouseWarning message if file was not saved, repaint ids...
2006-11-28 amwaterhouseTree title
2006-11-27 amwaterhouseCant save to a URL loaded Jar file
2006-11-27 amwaterhouseCant save to a URL loaded Jar file
2006-11-24 amwaterhouseseqColours null
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseIf alignment is closed, then undo performed in visible...
2006-11-23 amwaterhouseAssociate PCA with multiple views
2006-11-22 amwaterhouseDynamically build tree sort menu when sort menu is...
2006-11-22 amwaterhouseRenaming viewNames
2006-11-21 jprocterfix unselectable tree leaf nodes when node mapping...
2006-11-21 amwaterhouseexpanded views, j2xml use setinitialtabvisible, close...
2006-11-21 amwaterhouseUse textColourChooser
2006-11-20 amwaterhouseexpand and gather
2006-11-20 amwaterhouselook for current alignframe to search
2006-11-15 amwaterhouseAdd remove seq from multiple views, must fire alignment...
2006-11-15 amwaterhouseright align ids
2006-11-14 amwaterhousePaintrefresh alignpanel
2006-11-13 amwaterhouseREload from URL
2006-11-13 amwaterhouseText colour adapter
2006-11-09 amwaterhouseremove system.out
2006-11-09 amwaterhousesmooth font gone, setFileName and close open alignPanel
2006-11-08 amwaterhouseReload alignment
2006-11-08 amwaterhouseReload alignment
2006-11-06 amwaterhouseOnly recalc consensus for start to end of group
2006-11-06 amwaterhouseaccelerators, save menu item
2006-11-03 amwaterhouseAlignpanel is not new if copied from j2xml
2006-11-03 amwaterhouseUse Jalview2XML to copy AlignmentPanel
2006-11-02 amwaterhouseselected states set in updateMenusFromViewport
2006-10-27 amwaterhousePaintRefresher can calculate seqs added or removed
2006-10-26 amwaterhouseOnly adds history item if size>0
2006-10-26 amwaterhouseDont readd the undo
2006-10-26 amwaterhouseremove gaps size range
2006-10-25 amwaterhouseviewport.hasHiddenColumns updated after undo/redo performed
2006-10-24 amwaterhouseHistoryItem replaced by CommandI
2006-10-18 amwaterhouseNo longer a FeatureListener
2006-10-12 amwaterhouseIf conservation is null, disable Blosum62 and conservat...
2006-10-10 amwaterhouseNo need to find index when deleting
2006-10-10 amwaterhouseConsensus and conservation updated in threads
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code...
2006-10-06 jprocterAdded filter so that input to a JPred job is *solely...
2006-10-06 amwaterhouseAAFrequency optimized
2006-10-05 amwaterhouseMultiple Views
2006-09-27 jprocterfixed tree building exception when one residue or a...
2006-08-29 amwaterhousejnetfile can be loaded onto alignment
2006-08-21 amwaterhouseheader updated
2006-08-21 jprocterRefactored Jnet and added hidden columns support.
2006-08-17 jproctermoved visible sub-alignment extraction and update from...
2006-08-16 amwaterhouseFire alignment changed if seqs hidden / revealed
2006-08-15 amwaterhouseSetselectiongroup null on hide
2006-08-10 amwaterhouseOnly add 1 feature settings table
2006-08-10 amwaterhouseInvert column selection
2006-08-09 amwaterhouseNull hidden cols check
2006-08-04 jprocterrecover original data for tree and pca as alignment...
2006-07-28 amwaterhouseRemove system.out
2006-07-27 amwaterhouseseq size cant be less than 2 for tree
2006-07-26 amwaterhouseback to org.biojava
2006-07-26 amwaterhouseColumn hide/show updated
2006-07-25 amwaterhouseColumnSelection moved to datamodel
2006-07-25 amwaterhouseRepaint
2006-07-25 amwaterhousejalview.biojava
2006-07-25 amwaterhouseFileLoader replaces paste when Dropping files
2006-07-21 amwaterhousegetViewAsString can ignore sequenceGroup
2006-07-21 amwaterhouseShow hide cols and rows
2006-07-19 amwaterhouseSave output use whole alignment
2006-07-19 amwaterhouseCopy works with selection area
2006-07-18 amwaterhouseUse selection area with hidden columns in calculations
2006-07-13 amwaterhouseDAS feature retrieval updated
2006-07-12 amwaterhousesequences are private in SequenceGroup
2006-07-07 amwaterhousechangeColour is public
2006-06-23 amwaterhouseParse HTML links from jalview features file
2006-06-23 amwaterhouseNo need for repaint
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