git://source.jalview.org
/
jalview.git
/ history
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branch_i18n
[jalview.git]
/
src
/
jalview
/
gui
/
AlignFrame.java
2006-11-15
amwaterhouse
right align ids
blob
|
commitdiff
|
diff to current
2006-11-14
amwaterhouse
Paintrefresh alignpanel
blob
|
commitdiff
|
diff to current
2006-11-13
amwaterhouse
REload from URL
blob
|
commitdiff
|
diff to current
2006-11-13
amwaterhouse
Text colour adapter
blob
|
commitdiff
|
diff to current
2006-11-09
amwaterhouse
remove system.out
blob
|
commitdiff
|
diff to current
2006-11-09
amwaterhouse
smooth font gone, setFileName and close open alignPanel
blob
|
commitdiff
|
diff to current
2006-11-08
amwaterhouse
Reload alignment
blob
|
commitdiff
|
diff to current
2006-11-08
amwaterhouse
Reload alignment
blob
|
commitdiff
|
diff to current
2006-11-06
amwaterhouse
Only recalc consensus for start to end of group
blob
|
commitdiff
|
diff to current
2006-11-06
amwaterhouse
accelerators, save menu item
blob
|
commitdiff
|
diff to current
2006-11-03
amwaterhouse
Alignpanel is not new if copied from j2xml
blob
|
commitdiff
|
diff to current
2006-11-03
amwaterhouse
Use Jalview2XML to copy AlignmentPanel
blob
|
commitdiff
|
diff to current
2006-11-02
amwaterhouse
selected states set in updateMenusFromViewport
blob
|
commitdiff
|
diff to current
2006-10-27
amwaterhouse
PaintRefresher can calculate seqs added or removed
blob
|
commitdiff
|
diff to current
2006-10-26
amwaterhouse
Only adds history item if size>0
blob
|
commitdiff
|
diff to current
2006-10-26
amwaterhouse
Dont readd the undo
blob
|
commitdiff
|
diff to current
2006-10-26
amwaterhouse
remove gaps size range
blob
|
commitdiff
|
diff to current
2006-10-25
amwaterhouse
viewport.hasHiddenColumns updated after undo/redo performed
blob
|
commitdiff
|
diff to current
2006-10-24
amwaterhouse
HistoryItem replaced by CommandI
blob
|
commitdiff
|
diff to current
2006-10-18
amwaterhouse
No longer a FeatureListener
blob
|
commitdiff
|
diff to current
2006-10-12
amwaterhouse
If conservation is null, disable Blosum62 and conservat...
blob
|
commitdiff
|
diff to current
2006-10-10
amwaterhouse
No need to find index when deleting
blob
|
commitdiff
|
diff to current
2006-10-10
amwaterhouse
Consensus and conservation updated in threads
blob
|
commitdiff
|
diff to current
2006-10-09
jprocter
imported Vamsas bindings and alpha vamsas client code...
blob
|
commitdiff
|
diff to current
2006-10-06
jprocter
Added filter so that input to a JPred job is *solely...
blob
|
commitdiff
|
diff to current
2006-10-06
amwaterhouse
AAFrequency optimized
blob
|
commitdiff
|
diff to current
2006-10-05
amwaterhouse
Multiple Views
blob
|
commitdiff
|
diff to current
2006-09-27
jprocter
fixed tree building exception when one residue or a...
blob
|
commitdiff
|
diff to current
2006-08-29
amwaterhouse
jnetfile can be loaded onto alignment
blob
|
commitdiff
|
diff to current
2006-08-21
amwaterhouse
header updated
blob
|
commitdiff
|
diff to current
2006-08-21
jprocter
Refactored Jnet and added hidden columns support.
blob
|
commitdiff
|
diff to current
2006-08-17
jprocter
moved visible sub-alignment extraction and update from...
blob
|
commitdiff
|
diff to current
2006-08-16
amwaterhouse
Fire alignment changed if seqs hidden / revealed
blob
|
commitdiff
|
diff to current
2006-08-15
amwaterhouse
Setselectiongroup null on hide
blob
|
commitdiff
|
diff to current
2006-08-10
amwaterhouse
Only add 1 feature settings table
blob
|
commitdiff
|
diff to current
2006-08-10
amwaterhouse
Invert column selection
blob
|
commitdiff
|
diff to current
2006-08-09
amwaterhouse
Null hidden cols check
blob
|
commitdiff
|
diff to current
2006-08-04
jprocter
recover original data for tree and pca as alignment...
blob
|
commitdiff
|
diff to current
2006-07-28
amwaterhouse
Remove system.out
blob
|
commitdiff
|
diff to current
2006-07-27
amwaterhouse
seq size cant be less than 2 for tree
blob
|
commitdiff
|
diff to current
2006-07-26
amwaterhouse
back to org.biojava
blob
|
commitdiff
|
diff to current
2006-07-26
amwaterhouse
Column hide/show updated
blob
|
commitdiff
|
diff to current
2006-07-25
amwaterhouse
ColumnSelection moved to datamodel
blob
|
commitdiff
|
diff to current
2006-07-25
amwaterhouse
Repaint
blob
|
commitdiff
|
diff to current
2006-07-25
amwaterhouse
jalview.biojava
blob
|
commitdiff
|
diff to current
2006-07-25
amwaterhouse
FileLoader replaces paste when Dropping files
blob
|
commitdiff
|
diff to current
2006-07-21
amwaterhouse
getViewAsString can ignore sequenceGroup
blob
|
commitdiff
|
diff to current
2006-07-21
amwaterhouse
Show hide cols and rows
blob
|
commitdiff
|
diff to current
2006-07-19
amwaterhouse
Save output use whole alignment
blob
|
commitdiff
|
diff to current
2006-07-19
amwaterhouse
Copy works with selection area
blob
|
commitdiff
|
diff to current
2006-07-18
amwaterhouse
Use selection area with hidden columns in calculations
blob
|
commitdiff
|
diff to current
2006-07-13
amwaterhouse
DAS feature retrieval updated
blob
|
commitdiff
|
diff to current
2006-07-12
amwaterhouse
sequences are private in SequenceGroup
blob
|
commitdiff
|
diff to current
2006-07-07
amwaterhouse
changeColour is public
blob
|
commitdiff
|
diff to current
2006-06-23
amwaterhouse
Parse HTML links from jalview features file
blob
|
commitdiff
|
diff to current
2006-06-23
amwaterhouse
No need for repaint
blob
|
commitdiff
|
diff to current
2006-06-22
amwaterhouse
Fetch DBRefs
blob
|
commitdiff
|
diff to current
2006-06-15
amwaterhouse
Correct citation
blob
|
commitdiff
|
diff to current
2006-06-09
amwaterhouse
Feature and annotation parsing moved to io
blob
|
commitdiff
|
diff to current
2006-06-07
amwaterhouse
Wrap alignment added to preferences
blob
|
commitdiff
|
diff to current
2006-06-07
amwaterhouse
new DasSequenceFetcher
blob
|
commitdiff
|
diff to current
2006-05-17
amwaterhouse
Restrict annotation panel to 50% window on load
blob
|
commitdiff
|
diff to current
2006-05-12
amwaterhouse
pass viewport to fileloader, as we need to fireproperty...
blob
|
commitdiff
|
diff to current
2006-05-11
amwaterhouse
Recently loaded files, urls, append sequences to Alignment
blob
|
commitdiff
|
diff to current
2006-05-10
amwaterhouse
Copy and paste of annotations with seqrefs
blob
|
commitdiff
|
diff to current
2006-04-28
amwaterhouse
If autoCalculate selected, recalculate immediately
blob
|
commitdiff
|
diff to current
2006-04-19
amwaterhouse
Multiple views, alignpanels not being used
blob
|
commitdiff
|
diff to current
2006-04-19
amwaterhouse
Alignment might not have any annotations
blob
|
commitdiff
|
diff to current
2006-04-06
amwaterhouse
Hide ref to HiddenRegion
blob
|
commitdiff
|
diff to current
2006-04-06
amwaterhouse
Must copy feature settings from one frame to another...
blob
|
commitdiff
|
diff to current
2006-04-05
amwaterhouse
Padgap history
blob
|
commitdiff
|
diff to current
2006-04-04
amwaterhouse
loadDataFile is public
blob
|
commitdiff
|
diff to current
2006-04-04
amwaterhouse
Autocalculate consensus
blob
|
commitdiff
|
diff to current
2006-03-24
amwaterhouse
Load data file added
blob
|
commitdiff
|
diff to current
2006-03-16
amwaterhouse
historyItem.restore
blob
|
commitdiff
|
diff to current
2006-03-08
amwaterhouse
IdentifyFile should not be static
blob
|
commitdiff
|
diff to current
2006-02-24
amwaterhouse
Cannot delete residues
blob
|
commitdiff
|
diff to current
2006-02-16
amwaterhouse
translate cDNA adjusted
blob
|
commitdiff
|
diff to current
2006-02-16
amwaterhouse
Read startgroup and endgroup in features file
blob
|
commitdiff
|
diff to current
2006-02-15
amwaterhouse
Dont use FeatureFetcher if nucleotide
blob
|
commitdiff
|
diff to current
2006-02-13
amwaterhouse
Parsing features file - dont adjust for alignment position
blob
|
commitdiff
|
diff to current
2006-02-09
amwaterhouse
New implementation for holding search results
blob
|
commitdiff
|
diff to current
2006-02-08
amwaterhouse
Copy dataset annotations for paste(this)
blob
|
commitdiff
|
diff to current
2006-02-03
amwaterhouse
Reading features files readded as ref to FeatureRendere...
blob
|
commitdiff
|
diff to current
2006-01-30
amwaterhouse
Drop annotations onto alignment
blob
|
commitdiff
|
diff to current
2006-01-11
jprocter
refactored Alignframe padGaps code to Alignment and...
blob
|
commitdiff
|
diff to current
2005-12-22
amwaterhouse
Remove import
blob
|
commitdiff
|
diff to current
2005-12-08
amwaterhouse
If dataset seq exists for paste to existing alignment...
blob
|
commitdiff
|
diff to current
2005-12-06
amwaterhouse
Add features to dataset
blob
|
commitdiff
|
diff to current
2005-12-06
amwaterhouse
After merge
blob
|
commitdiff
|
diff to current
2005-10-03
amwaterhouse
Remove development code
blob
|
commitdiff
|
diff to current
2005-09-30
amwaterhouse
Remove redundancy in Eclipse
blob
|
commitdiff
|
diff to current
2005-09-22
amwaterhouse
Create instance of FormatAdapter
blob
|
commitdiff
|
diff to current
2005-09-22
amwaterhouse
If Mac user hasnt selected file format, give warning
blob
|
commitdiff
|
diff to current
2005-09-21
amwaterhouse
Sequences must be aligned before PCA
blob
|
commitdiff
|
diff to current
2005-09-20
amwaterhouse
PCAPanel just requires viewport
blob
|
commitdiff
|
diff to current
2005-09-19
amwaterhouse
Dont add ServiceListeners if desktop is null
blob
|
commitdiff
|
diff to current
2005-09-15
amwaterhouse
remove system.out
blob
|
commitdiff
|
diff to current
2005-09-14
amwaterhouse
Copy and paste uses FASTA format
blob
|
commitdiff
|
diff to current
2005-09-14
amwaterhouse
PCA is in outofmemory try-catch
blob
|
commitdiff
|
diff to current
next