| 2017-08-17 |
TZVanaalten | JAL-2629 add documentation to previous work |
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| 2017-08-15 |
TZVanaalten | JAL-2629 selected HMM name now shown in HMMER menu |
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| 2017-08-15 |
TZVanaalten | JAL-2629 the HMMER tab is now disabled when HMMER is... |
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| 2017-08-14 |
TZVanaalten | JAL-2629 remove redundant options from HMMER menu |
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| 2017-08-11 |
TZVanaalten | JAL-2599 HMMs can now be dropped onto the desktop |
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| 2017-08-10 |
TZVanaalten | JAL-2629 hmmalign now correctly creates a new frame |
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| 2017-08-10 |
tzvanaalten | JAL-2629 fix files permission issue on Mac |
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| 2017-08-09 |
TZVanaalten | JAL-2599 fix for issue where info annot would not display |
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| 2017-08-09 |
tzvanaalten | JAL-2599 fix for issue where info annot would not display |
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| 2017-08-09 |
TZVanaalten | JAL-2629 removed unnecessary exception throws from... |
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| 2017-08-08 |
TZVanaalten | JAL-2629 add ability to select hmmer binaries folder |
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| 2017-08-07 |
TZVanaalten | JAL-2629 current hmmer commands are now executed in... |
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| 2017-08-04 |
TZVanaalten | JAL-2629 multiple HMMs can now be dropped onto an alignment |
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| 2017-08-02 |
TZVanaalten | JAL-2599 fix for information annotation buttons |
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| 2017-07-31 |
TZVanaalten | JAL-2629 add hmmalign command |
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| 2017-07-27 |
TZVanaalten | JAL-2629 implement hmmbuild |
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| 2017-07-27 |
TZVanaalten | JAL-2629 moved HMM storage location to placeholder... |
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| 2017-07-25 |
TZVanaalten | JAL-2629 add non-functional HMMER menu |
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| 2017-07-24 |
tzvanaalten | JAL-2616 add placeholder sequence for HMM, does not... |
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| 2017-07-20 |
TZVanaalten | JAL-2616 remove statistical analysis from AlignFrame |
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| 2017-07-20 |
TZVanaalten | JAL-2599 add ability to process RNA HMMer files |
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| 2017-07-14 |
TZVanaalten | add partial button fix to annotation and statistics... features/hmmer_statistics |
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| 2017-07-12 |
TZVanaalten | test HMM annotaTION |
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| 2017-06-29 |
TZVanaalten | transferred the storage position of the HMM to annotations |
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| 2017-06-23 |
TZVanaalten | add HMMER colour scheme |
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| 2017-06-22 |
TZVanaalten | fully integrate HMMER3 file format into Jalview |
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| 2017-05-29 |
Jim Procter | Merge branch 'bug/JAL-2536' into develop |
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| 2017-05-16 |
kiramt | JAL-2536 Overview window sizing not subject to min... bug/JAL-2536 |
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| 2017-05-15 |
kiramt | Merge remote-tracking branch 'origin/develop' into... |
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| 2017-05-12 |
Jim Procter | Merge branch 'features/JAL-2388OverviewWindow' into... |
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| 2017-05-11 |
kiramt | JAL-2491 Unit tests and updates |
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| 2017-05-08 |
gmungoc | JAL-1632 i18n for warning messages |
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| 2017-05-08 |
kiramt | JAL-2491 Started moving other scrolling fns into viewpo... |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch |
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| 2017-05-05 |
kiramt | Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges |
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| 2017-05-02 |
gmungoc | JAL-2499 JAL-2403 push 'configure for view' inside... |
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| 2017-04-25 |
kiramt | JAL-2388 Working hidden regions hide/show in desktop |
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| 2017-04-24 |
kiramt | JAL-2388 Hidden cols separated from column selection... |
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| 2017-04-12 |
gmungoc | JAL-1632 removed check for aligned sequences for Tree... |
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| 2017-04-12 |
gmungoc | JAL-1632 one PCA/Tree per panel, closed when panel... |
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| 2017-04-07 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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| 2017-04-05 |
gmungoc | JAL-2361 simplify constructors, select unsaved but... |
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| 2017-03-31 |
gmungoc | Merge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView |
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| 2017-03-30 |
gmungoc | JAL-1608 leave Create Group, Remove Group menu items... |
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| 2017-03-29 |
gmungoc | Merge branch 'develop' into bug/JAL-1608createGroups |
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| 2017-03-24 |
gmungoc | JAL-1632 TreeChooser renamed CalculationChooser, text... |
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| 2017-03-24 |
gmungoc | JAL-838 move two callers off Comparison.PID and depreca... |
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| 2017-03-23 |
gmungoc | Merge branch 'develop' into features/JAL-2393customMatrices |
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| 2017-03-16 |
kiramt | JAL-2388 Applied ViewportRanges to code |
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| 2017-03-15 |
gmungoc | JAL-2431 show cDNA consensus after New View in split... |
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| 2017-02-27 |
kiramt | JAL-2388 Make startRes,startSeq,endRes,endSeq private... |
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| 2017-02-27 |
gmungoc | JAL-1632 similarity options on TreeChooser panel affect... |
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| 2017-02-27 |
gmungoc | JAL-1632 refactored NJTree constructor to include Simil... |
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| 2017-02-23 |
gmungoc | JAL-2403 JAL-1483 changes to ScoreModelI hierarchy... |
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| 2017-02-20 |
gmungoc | JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... |
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| 2017-02-17 |
gmungoc | JAL-2423 refactored method to build panel title for... |
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| 2017-02-14 |
gmungoc | Parsing moved to (new) ScoreMatrixFile, drag and drop... |
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| 2017-02-13 |
gmungoc | JAL-1632 first cut of Tree chooser dialog and ScoreMode... |
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| 2017-02-09 |
gmungoc | JAL-1608 menu entry text; enable/disable Create/Remove... |
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| 2017-01-31 |
gmungoc | JAL-2371 rename global/viewportColourScheme to residueS... |
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| 2017-01-31 |
gmungoc | JAL-2385 more tests/bug fixes mostly for gui.SliderPane... |
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| 2017-01-23 |
gmungoc | JAL-2386 unit tests for change colour (and minor refact... |
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| 2017-01-23 |
gmungoc | JAL-2386 simplify changeColour (doesn't change colour... |
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| 2017-01-20 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-20 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-19 |
gmungoc | JAL-2383 restore PID colour threshold from project... |
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| 2017-01-17 |
gmungoc | Merge branch 'features/JAL-2360colourSchemeApplicabilit... |
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| 2017-01-17 |
gmungoc | Merge branch 'develop' into features/JAL-2360colourSche... |
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| 2017-01-11 |
gmungoc | JAL-2344 FileFormats singleton for formats, FileFormatI... |
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| 2017-01-04 |
gmungoc | JAL-2371 CollectionColourScheme wraps ColourSchemeI |
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| 2016-12-22 |
gmungoc | JAL-2360 structure viewers now using ColourMenuHelper... |
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| 2016-12-21 |
gmungoc | JAL-2360 ColourMenuHelper now builds and selects items... |
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| 2016-12-20 |
gmungoc | JAL-2360 testRegisterColourScheme to demonstrate a... |
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| 2016-12-20 |
gmungoc | JAL-2360 ColourSchemes holds configured schemes, AlignF... |
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| 2016-12-19 |
gmungoc | JAL-2361 select colour menu item by matching its name... |
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| 2016-12-16 |
gmungoc | JAL-2360 refactoring for JalviewColourScheme enum, |
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| 2016-12-12 |
gmungoc | JAL-2361 extract methods to (re-)build colour menu |
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| 2016-12-09 |
gmungoc | JAL-1895 suppress RNA interaction colour option |
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| 2016-12-07 |
gmungoc | JAL-2344 handle null format, simplify JalviewFileChoose... |
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| 2016-11-29 |
gmungoc | JAL-2344 FileFormat.isStructureFile replaces |
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| 2016-11-28 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-25 |
gmungoc | Merge branch 'develop' into trialMerge |
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| 2016-11-25 |
gmungoc | JAL-2344 use .equals() to compare FileFormatI objects |
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| 2016-11-24 |
tcofoegbu | JAL-2326 updated references of JOptionPane to JvOptionPane |
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| 2016-11-24 |
gmungoc | Further tweaks to get tests passing |
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| 2016-11-24 |
gmungoc | FileFormatI further tweaks, clean compile |
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| 2016-11-22 |
Jim Procter | Merge branch 'features/JAL-1738_JAL-345_selectionfromhi... |
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| 2016-11-22 |
Jim Procter | JAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie... |
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| 2016-11-14 |
tcofoegbu | JAL-2322 Refactored unified architecture for data ... |
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| 2016-11-11 |
tcofoegbu | JAL-2277 Refactored out duplicated method - printUnwrap... |
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| 2016-11-02 |
Jim Procter | JAL-345 JAL-1738 menu item, AlignFrame action listener... |
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| 2016-11-01 |
tcofoegbu | JAL-2280 refactored and improved structure file identif... |
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| 2016-10-28 |
Jim Procter | JAL-966 SearchResultsI now on viewmodels.AlignmentViewp... |
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| 2016-10-27 |
tcofoegbu | JAL-2280 Improvement to enable drag'n'drop association... |
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| 2016-10-26 |
tcofoegbu | JAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli |
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| 2016-10-25 |
Jim Procter | JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch |
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| 2016-10-24 |
Jim Procter | Merge branch 'releases/Release_2_10_0_Branch' |
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| 2016-10-17 |
kiramt | acceptDrop call added before getTransferable in alignme... bug/JAL-1552dragndroptake2 |
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| 2016-10-06 |
Jim Procter | JAL-2089 Merge branch releases/Release_2_10_Branch... |
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| 2016-10-05 |
Jim Procter | JAL-2189 source formatting |
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