source.jalview.org Git - jalview.git/history - src/jalview/gui/AlignViewport.java

git://source.jalview.org / jalview.git / history

[jalview.git] / src / jalview / gui / AlignViewport.java

2007-09-25	jprocter	primitive methods for getting current undo/redo state...	blob \| commitdiff \| diff to current
2007-06-17	jprocter	enable mouseover between DNA coding regions and transla...	blob \| commitdiff \| diff to current
2007-05-03	amwaterhouse	optimize repaints	blob \| commitdiff \| diff to current
2007-05-02	jprocter	copy only the sequence associated alignment annotation...	blob \| commitdiff \| diff to current
2007-04-23	jprocter	distinct methods for getting references to selected...	blob \| commitdiff \| diff to current
2007-04-18	amwaterhouse	hastext = false	blob \| commitdiff \| diff to current
2007-04-18	amwaterhouse	Quality does not have text	blob \| commitdiff \| diff to current
2007-03-19	jprocter	convenience method to get visible selected region.	blob \| commitdiff \| diff to current
2007-02-27	amwaterhouse	Use paintAlignment	blob \| commitdiff \| diff to current
2007-02-07	amwaterhouse	Formatting	blob \| commitdiff \| diff to current
2007-01-29	amwaterhouse	ID_ITALICS option in preferences	blob \| commitdiff \| diff to current
2007-01-24	amwaterhouse	Conservation etc have autoCalculated flag set true	blob \| commitdiff \| diff to current
2007-01-23	amwaterhouse	Hidden representatives moved from sequence to viewport	blob \| commitdiff \| diff to current
2006-12-05	amwaterhouse	Sequence is char []	blob \| commitdiff \| diff to current
2006-11-24	amwaterhouse	Invert col sel with hidden cols bug fixed	blob \| commitdiff \| diff to current
2006-11-21	amwaterhouse	RightAlign ids from prefs	blob \| commitdiff \| diff to current
2006-11-15	amwaterhouse	right align ids	blob \| commitdiff \| diff to current
2006-11-13	amwaterhouse	sequence colours and text colours added	blob \| commitdiff \| diff to current
2006-11-07	amwaterhouse	Tidy up group size after alignmentChanged	blob \| commitdiff \| diff to current
2006-11-02	amwaterhouse	History is per viewport	blob \| commitdiff \| diff to current
2006-10-30	amwaterhouse	conservation lock	blob \| commitdiff \| diff to current
2006-10-27	amwaterhouse	Remove consensus annotation if out of memory	blob \| commitdiff \| diff to current
2006-10-27	amwaterhouse	updatingConsensus, updatingConservation is static ...	blob \| commitdiff \| diff to current
2006-10-27	amwaterhouse	Reset colour schemes and alignmentChanged moved to...	blob \| commitdiff \| diff to current
2006-10-26	amwaterhouse	showConservation, quality, identity not used	blob \| commitdiff \| diff to current
2006-10-25	amwaterhouse	Return if negative width, ie alignment deleted	blob \| commitdiff \| diff to current
2006-10-18	amwaterhouse	set conserve and quality null if outofmemory	blob \| commitdiff \| diff to current
2006-10-12	amwaterhouse	showQuality may be updated during archive file load	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	Calculate alWidth earlier	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	Must repaint whole alignPanel	blob \| commitdiff \| diff to current
2006-10-10	amwaterhouse	Consensus and conservation updated in threads	blob \| commitdiff \| diff to current
2006-10-09	jprocter	set firstColumn property for an alignmentView object.	blob \| commitdiff \| diff to current
2006-10-06	amwaterhouse	AAFrequency optimized	blob \| commitdiff \| diff to current
2006-10-05	amwaterhouse	Multiple Views	blob \| commitdiff \| diff to current
2006-09-27	jprocter	fixed tree building exception when one residue or a...	blob \| commitdiff \| diff to current
2006-09-12	amwaterhouse	hideSequence hide all before recalc consensus	blob \| commitdiff \| diff to current
2006-09-07	jprocter	added copy consensus sequence to consensus annotation...	blob \| commitdiff \| diff to current
2006-08-21	amwaterhouse	header updated	blob \| commitdiff \| diff to current
2006-08-17	amwaterhouse	Hold onto selected region when hiding all columns only	blob \| commitdiff \| diff to current
2006-08-17	amwaterhouse	Dont set group null hideCOls	blob \| commitdiff \| diff to current
2006-08-16	amwaterhouse	Fire alignment changed if seqs hidden / revealed	blob \| commitdiff \| diff to current
2006-08-15	amwaterhouse	Select revealed seqs	blob \| commitdiff \| diff to current
2006-08-10	amwaterhouse	Invert column selection	blob \| commitdiff \| diff to current
2006-08-04	jprocter	recover original data for tree and pca as alignment...	blob \| commitdiff \| diff to current
2006-07-28	amwaterhouse	getIndex replaced with findSeq in seqPanel	blob \| commitdiff \| diff to current
2006-07-26	jprocter	Implemented CIGAR representation of an Alignment view...	blob \| commitdiff \| diff to current
2006-07-26	amwaterhouse	Column hide/show updated	blob \| commitdiff \| diff to current
2006-07-25	amwaterhouse	ColumnSelection moved to datamodel	blob \| commitdiff \| diff to current
2006-07-21	amwaterhouse	getViewAsString can ignore sequenceGroup	blob \| commitdiff \| diff to current
2006-07-21	amwaterhouse	show hide stuff moved from columnSelection	blob \| commitdiff \| diff to current
2006-07-18	amwaterhouse	Use selection area with hidden columns in calculations	blob \| commitdiff \| diff to current
2006-07-12	amwaterhouse	sequences are private in SequenceGroup	blob \| commitdiff \| diff to current
2006-04-28	amwaterhouse	validCharWidth moved to viewport	blob \| commitdiff \| diff to current
2006-04-13	amwaterhouse	showInternalMessage jdk1.5 bug	blob \| commitdiff \| diff to current
2006-04-07	amwaterhouse	padGaps set in preferences	blob \| commitdiff \| diff to current
2006-04-07	amwaterhouse	Autocalculate consensus set in preferences	blob \| commitdiff \| diff to current
2006-04-04	amwaterhouse	Autocalculate consensus	blob \| commitdiff \| diff to current
2006-03-24	amwaterhouse	CursoMode added	blob \| commitdiff \| diff to current
2006-03-16	amwaterhouse	HideSequences	blob \| commitdiff \| diff to current
2006-02-24	amwaterhouse	Features added	blob \| commitdiff \| diff to current
2006-01-30	amwaterhouse	Anti alias flag	blob \| commitdiff \| diff to current
2005-12-22	amwaterhouse	Annotations.Graph can be bargraph, linegraph	blob \| commitdiff \| diff to current
2005-12-06	amwaterhouse	After merge	blob \| commitdiff \| diff to current
2005-09-22	amwaterhouse	Dont calculate conservation for nucleotides	blob \| commitdiff \| diff to current
2005-09-22	amwaterhouse	Wrap alignment with annotations	blob \| commitdiff \| diff to current
2005-09-15	amwaterhouse	OptionPane warning for out of memory	blob \| commitdiff \| diff to current
2005-09-14	amwaterhouse	System.gc after outofmemory	blob \| commitdiff \| diff to current
2005-09-08	amwaterhouse	update consensus and conservation are in try catch...	blob \| commitdiff \| diff to current
2005-09-01	amwaterhouse	Use propertyListener for alignment edits	blob \| commitdiff \| diff to current
2005-08-22	amwaterhouse	Conservation colour scheme is no more	blob \| commitdiff \| diff to current
2005-08-17	jprocter	Gui Modifications for Service Discovery.	blob \| commitdiff \| diff to current
2005-08-15	amwaterhouse	IgnoreGapsConsensus	blob \| commitdiff \| diff to current
2005-08-09	amwaterhouse	Properties file is used in preference to viewport/cache...	blob \| commitdiff \| diff to current
2005-08-03	amwaterhouse	Use Container to get fontMetrics	blob \| commitdiff \| diff to current
2005-07-11	amwaterhouse	check groupsize is non zero	blob \| commitdiff \| diff to current
2005-06-30	amwaterhouse	Formatting changes	blob \| commitdiff \| diff to current
2005-06-14	amwaterhouse	add value to conservation mouseover	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	Formatted source	blob \| commitdiff \| diff to current
2005-06-08	amwaterhouse	GPL license added	blob \| commitdiff \| diff to current
2005-05-27	amwaterhouse	Check if usrCol is null	blob \| commitdiff \| diff to current
2005-05-26	amwaterhouse	DOnt add Conservation graph to every residue	blob \| commitdiff \| diff to current
2005-05-25	amwaterhouse	usercolours changed	blob \| commitdiff \| diff to current
2005-05-25	jprocter	tidied up system.out messages and moved many to stderr.	blob \| commitdiff \| diff to current
2005-05-24	jprocter	added PropertyChangeListeners for alignviewport.alignme...	blob \| commitdiff \| diff to current
2005-05-19	amwaterhouse	% identity is consensus	blob \| commitdiff \| diff to current
2005-05-04	amwaterhouse	renderer removed	blob \| commitdiff \| diff to current
2005-04-29	amwaterhouse	preferences held statically	blob \| commitdiff \| diff to current
2005-04-28	amwaterhouse	Viewport now looks at preferences when loading up	blob \| commitdiff \| diff to current
2005-04-15	amwaterhouse	public vconsensus available for PID and Blosum	blob \| commitdiff \| diff to current
2005-04-14	amwaterhouse	use 3 as the threshold	blob \| commitdiff \| diff to current
2005-04-14	jprocter	consistent percentage gaps filter for conservation...	blob \| commitdiff \| diff to current
2005-04-14	jprocter	added quality calculation from Jalview118, and scale...	blob \| commitdiff \| diff to current
2005-04-08	amwaterhouse	conservation changed to quality	blob \| commitdiff \| diff to current
2005-04-08	amwaterhouse	scale above, left right added	blob \| commitdiff \| diff to current
2005-04-08	jprocter	Alignment quality with funky coloured histograms.	blob \| commitdiff \| diff to current
2005-04-06	amwaterhouse	showAnnotation added	blob \| commitdiff \| diff to current
2005-04-06	amwaterhouse	mosueOver graph gives int, not float	blob \| commitdiff \| diff to current
2005-04-01	amwaterhouse	Alignment Annotation added	blob \| commitdiff \| diff to current
2005-03-23	amwaterhouse	resetSeqLimits altered	blob \| commitdiff \| diff to current
2005-03-17	amwaterhouse	view full id name optional	blob \| commitdiff \| diff to current
next

RSS Atom