adds JS hook for JTable repaint
[jalview.git] / src / jalview / gui / AlignViewport.java
2007-09-25 jprocterprimitive methods for getting current undo/redo state...
2007-06-17 jprocterenable mouseover between DNA coding regions and transla...
2007-05-03 amwaterhouseoptimize repaints
2007-05-02 jproctercopy only the sequence associated alignment annotation...
2007-04-23 jprocterdistinct methods for getting references to selected...
2007-04-18 amwaterhousehastext = false
2007-04-18 amwaterhouseQuality does not have text
2007-03-19 jprocterconvenience method to get visible selected region.
2007-02-27 amwaterhouseUse paintAlignment
2007-02-07 amwaterhouseFormatting
2007-01-29 amwaterhouseID_ITALICS option in preferences
2007-01-24 amwaterhouseConservation etc have autoCalculated flag set true
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2006-12-05 amwaterhouseSequence is char []
2006-11-24 amwaterhouseInvert col sel with hidden cols bug fixed
2006-11-21 amwaterhouseRightAlign ids from prefs
2006-11-15 amwaterhouseright align ids
2006-11-13 amwaterhousesequence colours and text colours added
2006-11-07 amwaterhouseTidy up group size after alignmentChanged
2006-11-02 amwaterhouseHistory is per viewport
2006-10-30 amwaterhouseconservation lock
2006-10-27 amwaterhouseRemove consensus annotation if out of memory
2006-10-27 amwaterhouseupdatingConsensus, updatingConservation is static ...
2006-10-27 amwaterhouseReset colour schemes and alignmentChanged moved to...
2006-10-26 amwaterhouseshowConservation, quality, identity not used
2006-10-25 amwaterhouseReturn if negative width, ie alignment deleted
2006-10-18 amwaterhouseset conserve and quality null if outofmemory
2006-10-12 amwaterhouseshowQuality may be updated during archive file load
2006-10-10 amwaterhouseCalculate alWidth earlier
2006-10-10 amwaterhouseMust repaint whole alignPanel
2006-10-10 amwaterhouseConsensus and conservation updated in threads
2006-10-09 jprocterset firstColumn property for an alignmentView object.
2006-10-06 amwaterhouseAAFrequency optimized
2006-10-05 amwaterhouseMultiple Views
2006-09-27 jprocterfixed tree building exception when one residue or a...
2006-09-12 amwaterhousehideSequence hide all before recalc consensus
2006-09-07 jprocteradded copy consensus sequence to consensus annotation...
2006-08-21 amwaterhouseheader updated
2006-08-17 amwaterhouseHold onto selected region when hiding all columns only
2006-08-17 amwaterhouseDont set group null hideCOls
2006-08-16 amwaterhouseFire alignment changed if seqs hidden / revealed
2006-08-15 amwaterhouseSelect revealed seqs
2006-08-10 amwaterhouseInvert column selection
2006-08-04 jprocterrecover original data for tree and pca as alignment...
2006-07-28 amwaterhousegetIndex replaced with findSeq in seqPanel
2006-07-26 jprocterImplemented CIGAR representation of an Alignment view...
2006-07-26 amwaterhouseColumn hide/show updated
2006-07-25 amwaterhouseColumnSelection moved to datamodel
2006-07-21 amwaterhousegetViewAsString can ignore sequenceGroup
2006-07-21 amwaterhouseshow hide stuff moved from columnSelection
2006-07-18 amwaterhouseUse selection area with hidden columns in calculations
2006-07-12 amwaterhousesequences are private in SequenceGroup
2006-04-28 amwaterhousevalidCharWidth moved to viewport
2006-04-13 amwaterhouseshowInternalMessage jdk1.5 bug
2006-04-07 amwaterhousepadGaps set in preferences
2006-04-07 amwaterhouseAutocalculate consensus set in preferences
2006-04-04 amwaterhouseAutocalculate consensus
2006-03-24 amwaterhouseCursoMode added
2006-03-16 amwaterhouseHideSequences
2006-02-24 amwaterhouseFeatures added
2006-01-30 amwaterhouseAnti alias flag
2005-12-22 amwaterhouseAnnotations.Graph can be bargraph, linegraph
2005-12-06 amwaterhouseAfter merge
2005-09-22 amwaterhouseDont calculate conservation for nucleotides
2005-09-22 amwaterhouseWrap alignment with annotations
2005-09-15 amwaterhouseOptionPane warning for out of memory
2005-09-14 amwaterhouseSystem.gc after outofmemory
2005-09-08 amwaterhouseupdate consensus and conservation are in try catch...
2005-09-01 amwaterhouseUse propertyListener for alignment edits
2005-08-22 amwaterhouseConservation colour scheme is no more
2005-08-17 jprocterGui Modifications for Service Discovery.
2005-08-15 amwaterhouseIgnoreGapsConsensus
2005-08-09 amwaterhouseProperties file is used in preference to viewport/cache...
2005-08-03 amwaterhouseUse Container to get fontMetrics
2005-07-11 amwaterhousecheck groupsize is non zero
2005-06-30 amwaterhouseFormatting changes
2005-06-14 amwaterhouseadd value to conservation mouseover
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-27 amwaterhouseCheck if usrCol is null
2005-05-26 amwaterhouseDOnt add Conservation graph to every residue
2005-05-25 amwaterhouseusercolours changed
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-24 jprocteradded PropertyChangeListeners for alignviewport.alignme...
2005-05-19 amwaterhouse% identity is consensus
2005-05-04 amwaterhouserenderer removed
2005-04-29 amwaterhousepreferences held statically
2005-04-28 amwaterhouseViewport now looks at preferences when loading up
2005-04-15 amwaterhousepublic vconsensus available for PID and Blosum
2005-04-14 amwaterhouseuse 3 as the threshold
2005-04-14 jprocterconsistent percentage gaps filter for conservation...
2005-04-14 jprocteradded quality calculation from Jalview118, and scale...
2005-04-08 amwaterhouseconservation changed to quality
2005-04-08 amwaterhousescale above, left right added
2005-04-08 jprocterAlignment quality with funky coloured histograms.
2005-04-06 amwaterhouseshowAnnotation added
2005-04-06 amwaterhousemosueOver graph gives int, not float
2005-04-01 amwaterhouseAlignment Annotation added
2005-03-23 amwaterhouseresetSeqLimits altered
2005-03-17 amwaterhouseview full id name optional
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