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JAL-3066 Fix NullPointerException thrown when showing HMMER run dialog
[jalview.git]
/
src
/
jalview
/
gui
/
AlignViewport.java
2012-05-30
jprocter
JAL-969 - refactor colourscheme machinery from GUI...
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2012-05-30
jprocter
JAL-1114 - refactor methods handling Vectors and Hashta...
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diff to current
2011-10-28
jprocter
JAL-969 - refactor initialisation of automatic annotati...
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diff to current
2011-10-27
jprocter
(JAL-969) refactored alignmentViewport base class to...
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diff to current
2011-10-21
jprocter
Refactored alignment viewport to use common base, exten...
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diff to current
2011-10-14
jprocter
(JAL-958) - normalised sequence logo for applet
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diff to current
2011-10-11
jprocter
normalised logo rendering (JAL-958)
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diff to current
2011-10-10
jprocter
update author list in license for (JAL-826)
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diff to current
2011-10-04
jprocter
Merge remote-tracking branch 'remotes/origin/2_5_1_rna_...
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diff to current
2011-09-27
jprocter
apply version 2.7 copyright
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diff to current
2011-08-11
janengelhardt
JAL-885; hasRNAStructure method was introduced to Align...
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diff to current
2011-08-10
janengelhardt
JAL-885; Structure conservation row is just added if...
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diff to current
2011-08-08
janengelhardt
JAL-891; structure logo is adapted to two char's; Missi...
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diff to current
2011-08-08
janengelhardt
JAL-891; sequence logos are available on structure...
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diff to current
2011-07-31
janengelhardt
JAL-885; StructureConservation row is displayed at...
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diff to current
2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
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diff to current
2011-07-09
jprocter
refactored from PopupMenu (for JAL-860)
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diff to current
2011-05-17
jprocter
refactor to allow distinct StructureSelectionManager...
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diff to current
2011-02-18
jprocter
JAL-574
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diff to current
2011-02-04
jprocter
javadoc
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diff to current
2011-01-18
jprocter
refactored VamsasListener to allow the source of the...
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diff to current
2010-12-09
jprocter
refactored and added methods for getting richer Alignme...
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diff to current
2010-11-12
jprocter
patch for JAL-699 so conservation/consensus threads...
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diff to current
2010-09-23
jprocter
apply jalview code style
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diff to current
2010-09-23
jprocter
Jalview 2.6 source licence
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diff to current
2010-08-20
jprocter
avoid race condition by setting sequence logo flag...
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2010-06-11
jprocter
patched for JAL-531 - only display full symbol distribu...
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diff to current
2010-06-08
jprocter
followSelections flag now set via user preferences...
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2010-04-30
jprocter
jalview 2.5 release banner
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2010-04-29
jprocter
new selection manipulation method
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2010-04-14
jprocter
profile visualizations are now logos
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diff to current
2010-04-05
jprocter
javadoc
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diff to current
2010-03-30
jprocter
group autoannotation and consensus display settings
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diff to current
2009-10-14
jprocter
quick fix for nullpointer in column selection when...
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diff to current
2009-08-21
jprocter
viewport setting for displaying sequence logos
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diff to current
2009-07-24
jprocter
refactored conservation thread, added showgroupannotati...
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diff to current
2009-06-08
jprocter
apply gpl development license
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diff to current
2009-03-17
jprocter
sortbytree view setting and action added - setting...
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diff to current
2009-02-24
jprocter
bugfix for occasional nullpointer exceptions when selec...
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diff to current
2009-02-06
jprocter
showUnconserved view and group setting
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diff to current
2009-01-09
jprocter
hack to completely disable calculation of consensus...
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diff to current
2008-12-19
jprocter
new sort by length method, justify edit menu entries...
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diff to current
2008-11-12
jprocter
selection sending and receiving, autoscrolling to highl...
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diff to current
2008-09-08
jprocter
view settings in view submenu and user preferences...
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diff to current
2008-09-04
jprocter
merge from 2_4_Release branch
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diff to current
2008-07-18
jprocter
Sequence label colour stored for each sequence group
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2008-04-21
jprocter
added centre annotation labels menu entry (and commente...
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diff to current
2007-10-31
jprocter
nullpointer bug fix on consensus thread
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2007-10-04
jprocter
refactored invertColumnSelection as an object method
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diff to current
2007-09-25
jprocter
primitive methods for getting current undo/redo state...
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diff to current
2007-06-17
jprocter
enable mouseover between DNA coding regions and transla...
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diff to current
2007-05-03
amwaterhouse
optimize repaints
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diff to current
2007-05-02
jprocter
copy only the sequence associated alignment annotation...
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2007-04-23
jprocter
distinct methods for getting references to selected...
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diff to current
2007-04-18
amwaterhouse
hastext = false
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diff to current
2007-04-18
amwaterhouse
Quality does not have text
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diff to current
2007-03-19
jprocter
convenience method to get visible selected region.
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2007-02-27
amwaterhouse
Use paintAlignment
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2007-02-07
amwaterhouse
Formatting
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2007-01-29
amwaterhouse
ID_ITALICS option in preferences
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2007-01-24
amwaterhouse
Conservation etc have autoCalculated flag set true
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diff to current
2007-01-23
amwaterhouse
Hidden representatives moved from sequence to viewport
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2006-12-05
amwaterhouse
Sequence is char []
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2006-11-24
amwaterhouse
Invert col sel with hidden cols bug fixed
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2006-11-21
amwaterhouse
RightAlign ids from prefs
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2006-11-15
amwaterhouse
right align ids
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2006-11-13
amwaterhouse
sequence colours and text colours added
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2006-11-07
amwaterhouse
Tidy up group size after alignmentChanged
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2006-11-02
amwaterhouse
History is per viewport
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2006-10-30
amwaterhouse
conservation lock
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diff to current
2006-10-27
amwaterhouse
Remove consensus annotation if out of memory
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diff to current
2006-10-27
amwaterhouse
updatingConsensus, updatingConservation is static ...
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diff to current
2006-10-27
amwaterhouse
Reset colour schemes and alignmentChanged moved to...
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2006-10-26
amwaterhouse
showConservation, quality, identity not used
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diff to current
2006-10-25
amwaterhouse
Return if negative width, ie alignment deleted
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diff to current
2006-10-18
amwaterhouse
set conserve and quality null if outofmemory
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diff to current
2006-10-12
amwaterhouse
showQuality may be updated during archive file load
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diff to current
2006-10-10
amwaterhouse
Calculate alWidth earlier
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diff to current
2006-10-10
amwaterhouse
Must repaint whole alignPanel
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diff to current
2006-10-10
amwaterhouse
Consensus and conservation updated in threads
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diff to current
2006-10-09
jprocter
set firstColumn property for an alignmentView object.
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diff to current
2006-10-06
amwaterhouse
AAFrequency optimized
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diff to current
2006-10-05
amwaterhouse
Multiple Views
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diff to current
2006-09-27
jprocter
fixed tree building exception when one residue or a...
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diff to current
2006-09-12
amwaterhouse
hideSequence hide all before recalc consensus
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diff to current
2006-09-07
jprocter
added copy consensus sequence to consensus annotation...
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2006-08-21
amwaterhouse
header updated
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diff to current
2006-08-17
amwaterhouse
Hold onto selected region when hiding all columns only
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diff to current
2006-08-17
amwaterhouse
Dont set group null hideCOls
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diff to current
2006-08-16
amwaterhouse
Fire alignment changed if seqs hidden / revealed
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2006-08-15
amwaterhouse
Select revealed seqs
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diff to current
2006-08-10
amwaterhouse
Invert column selection
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diff to current
2006-08-04
jprocter
recover original data for tree and pca as alignment...
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diff to current
2006-07-28
amwaterhouse
getIndex replaced with findSeq in seqPanel
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diff to current
2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
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diff to current
2006-07-26
amwaterhouse
Column hide/show updated
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diff to current
2006-07-25
amwaterhouse
ColumnSelection moved to datamodel
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diff to current
2006-07-21
amwaterhouse
getViewAsString can ignore sequenceGroup
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diff to current
2006-07-21
amwaterhouse
show hide stuff moved from columnSelection
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diff to current
2006-07-18
amwaterhouse
Use selection area with hidden columns in calculations
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