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[jalview.git] / src / jalview / gui / SeqPanel.java

2017-07-19	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-07-06	gmungoc	JAL-1858 fast paint wrapped highlights unless view...	blob \| commitdiff \| diff to current
2017-06-29	gmungoc	JAL-147 improved wrapped scrolling (including Overview...	blob \| commitdiff \| diff to current
2017-06-29	gmungoc	JAL-2605 exclude left/right scale in sequence column...	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-1858 repaint after Amend Features dialog	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-06-27	gmungoc	JAL-1858 highlights on wrapped panel - work in progress	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-06-08	gmungoc	JAL-2526 setStatusMessage avoid redundant findPosition...	blob \| commitdiff \| diff to current
2017-06-06	kiramt	JAL-2591 Removed getHiddenRegions()==null checks which...	blob \| commitdiff \| diff to current
2017-06-02	gmungoc	Merge branch 'features/JAL-2446NCList' into features...	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-06-01	gmungoc	JAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn	blob \| commitdiff \| diff to current
2017-05-31	Jim Procter	Merge branch 'JAL-2571' into develop	blob \| commitdiff \| diff to current
2017-05-31	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-31	gmungoc	JAL-2547 handle contact features 'around' a gap correctly	blob \| commitdiff \| diff to current
2017-05-30	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-30	gmungoc	JAL-2547 tooltip/AmendFeatures on gap straddled by...	blob \| commitdiff \| diff to current
2017-05-30	kiramt	JAL-2571 Corrected alignment width/height checks to...	blob \| commitdiff \| diff to current
2017-05-30	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	Merge branch 'bug/JAL-2034contextchange' into develop	blob \| commitdiff \| diff to current
2017-05-29	gmungoc	Merge branch 'develop' into features/JAL-2446NCList	blob \| commitdiff \| diff to current
2017-05-27	Jim Procter	Merge branch 'bug/JAL-2491' into develop	blob \| commitdiff \| diff to current
2017-05-27	Jim Procter	Merge branch 'bug/JAL-2547tooltipOnGap' into develop	blob \| commitdiff \| diff to current
2017-05-27	Jim Procter	JAL-2526 test and documentation for SeqPanel.setStatus...	blob \| commitdiff \| diff to current
2017-05-26	gmungoc	JAL-2290 no update if no change of residue JAL-2547...	blob \| commitdiff \| diff to current
2017-05-25	kiramt	JAL-2034 don't update overview after click without...	blob \| commitdiff \| diff to current
2017-05-24	kiramt	JAL-2551 Fix to group colouring when group extent is... bug/JAL-2551	blob \| commitdiff \| diff to current
2017-05-23	gmungoc	JAL-2547 don't show features in tooltip over a gap bug/JAL-2547tooltipOnGap	blob \| commitdiff \| diff to current
2017-05-19	gmungoc	JAL-2526 removed redundant call to Sequence.findPosition()	blob \| commitdiff \| diff to current
2017-05-17	gmungoc	JAL-2504 use (and update) defaults for new feature...	blob \| commitdiff \| diff to current
2017-05-15	kiramt	Merge remote-tracking branch 'origin/develop' into...	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2435splitScreenFont' into...	blob \| commitdiff \| diff to current
2017-05-12	Jim Procter	Merge branch 'features/JAL-2388OverviewWindow' into...	blob \| commitdiff \| diff to current
2017-05-12	kiramt	JAL-2491 Renamed comp scrolling flag for consistency...	blob \| commitdiff \| diff to current
2017-05-10	kiramt	JAL-2522 Fix to cursor scrolling	blob \| commitdiff \| diff to current
2017-05-10	kiramt	JAL-2491 Cursor scrolling	blob \| commitdiff \| diff to current
2017-05-09	kiramt	JAL-2491 Tidies and more refactoring	blob \| commitdiff \| diff to current
2017-05-09	kiramt	JAL-2491 Resolved highlighting and initialisation problems	blob \| commitdiff \| diff to current
2017-05-08	kiramt	JAL-2491 Started moving other scrolling fns into viewpo...	blob \| commitdiff \| diff to current
2017-05-05	gmungoc	Merge branch 'develop' into features/JAL-2435splitScree...	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch	blob \| commitdiff \| diff to current
2017-05-05	kiramt	Merge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges	blob \| commitdiff \| diff to current
2017-05-05	kiramt	JAL-2491 More working split panel + new scrolling	blob \| commitdiff \| diff to current
2017-05-04	gmungoc	Merge branch 'develop' of https://source.jalview.org...	blob \| commitdiff \| diff to current
2017-05-04	gmungoc	JAL-2504 allow feature type to be specified for Create...	blob \| commitdiff \| diff to current
2017-05-02	Jim Procter	JAL-1632 validate CalculationChooser when selection...	blob \| commitdiff \| diff to current
2017-04-26	kiramt	Merge remote-tracking branch 'origin/features/JAL-2388h...	blob \| commitdiff \| diff to current
2017-04-26	kiramt	JAL-2388 last separation of hidden columns/col selection	blob \| commitdiff \| diff to current
2017-04-25	kiramt	JAL-2388 Working hidden regions hide/show in desktop	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Finished split of hidden columns and selected...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-04-19	gmungoc	JAL-2435 mirror font changes with middle mouse drag	blob \| commitdiff \| diff to current
2017-03-23	gmungoc	Merge branch 'develop' into features/JAL-2393customMatrices	blob \| commitdiff \| diff to current
2017-03-16	kiramt	JAL-2388 Applied ViewportRanges to code	blob \| commitdiff \| diff to current
2017-02-27	kiramt	JAL-2388 Make startRes,startSeq,endRes,endSeq private...	blob \| commitdiff \| diff to current
2017-02-27	gmungoc	JAL-1632 refactored NJTree constructor to include Simil...	blob \| commitdiff \| diff to current
2017-02-15	Jim Procter	JAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu	blob \| commitdiff \| diff to current
2017-02-15	Jim Procter	fix for JAL-2419 - don’t trash the current selection	blob \| commitdiff \| diff to current
2017-02-15	Jim Procter	JAL-2374 don’t search twice for containing group to...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2371 rename global/viewportColourScheme to residueS...	blob \| commitdiff \| diff to current
2017-01-31	gmungoc	JAL-2385 more tests/bug fixes mostly for gui.SliderPane...	blob \| commitdiff \| diff to current
2017-01-27	gmungoc	JAL-2371 CollectionColourScheme renamed ResidueShader...	blob \| commitdiff \| diff to current
2017-01-20	gmungoc	Merge branch 'features/JAL-2360colourSchemeApplicabilit...	blob \| commitdiff \| diff to current
2017-01-20	gmungoc	JAL-2385 update slider settings when switching slider...	blob \| commitdiff \| diff to current
2017-01-06	gmungoc	Merge branch 'features/JAL-2360colourSchemeApplicabilit...	blob \| commitdiff \| diff to current
2017-01-05	gmungoc	JAL-2374 fix popup out by one and multiple groups bugs	blob \| commitdiff \| diff to current
2017-01-04	gmungoc	JAL-2371 CollectionColourScheme wraps ColourSchemeI	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-22	Jim Procter	Merge branch 'features/JAL-1738_JAL-345_selectionfromhi...	blob \| commitdiff \| diff to current
2016-10-31	gmungoc	JAL-1723 ellipsis in tooltip if xrefs to more than...	blob \| commitdiff \| diff to current
2016-10-31	gmungoc	Merge branch 'develop' into features/JAL-1723_sequenceR...	blob \| commitdiff \| diff to current
2016-10-28	Jim Procter	JAL-966 JAL-1738 JAL-345 interfaces for SearchResults...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-10-24	Jim Procter	Merge branch 'releases/Release_2_10_0_Branch'	blob \| commitdiff \| diff to current
2016-10-24	gmungoc	JAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit	blob \| commitdiff \| diff to current
2016-10-06	Jim Procter	JAL-2089 Merge branch releases/Release_2_10_Branch...	blob \| commitdiff \| diff to current
2016-10-05	Jim Procter	JAL-2189 source formatting	blob \| commitdiff \| diff to current
2016-09-01	Jim Procter	Merge branch 'bug/JAL-2034_fix' into develop	blob \| commitdiff \| diff to current
2016-09-01	Jim Procter	JAL-2034 - remember to reset needsOverviewUpdate at...	blob \| commitdiff \| diff to current
2016-09-01	gmungoc	JAL-2077 do nothing in mousePressed if right button...	blob \| commitdiff \| diff to current
2016-08-31	gmungoc	JAL-2077 test isPopupTrigger in mouseReleased or mouseC...	blob \| commitdiff \| diff to current
2016-08-31	Jim Procter	JAL-2034 moved ‘isDefinedGroup’ flag to a test method...	blob \| commitdiff \| diff to current
2016-08-10	gmungoc	JAL-2146 small optimisation (avoid String creation)	blob \| commitdiff \| diff to current
2016-07-19	Jim Procter	Merge branch 'develop' into efficiency/JAL-2034_JAL...	blob \| commitdiff \| diff to current
2016-05-31	gmungoc	JAL-1011 JAL-1989 don't mirror column-only selections...	blob \| commitdiff \| diff to current
2016-05-30	Jim Procter	Merge branch 'develop' into efficiency/JAL-2034_JAL...	blob \| commitdiff \| diff to current
2016-05-27	gmungoc	JAL-1989 tightened up use of flag for 'column selection...	blob \| commitdiff \| diff to current
2016-04-24	Jim Procter	JAL-2077 - reinstate popups on osx	blob \| commitdiff \| diff to current
2016-04-14	gmungoc	JAL-1421 typed map / lists, explicit imports, method...	blob \| commitdiff \| diff to current
2016-04-12	gmungoc	JAL-1723 tooltip dbrefs sorted and limited to two per...	blob \| commitdiff \| diff to current
2016-03-25	Jim Procter	JAL-2034 disable overview updates when extent of a...	blob \| commitdiff \| diff to current
2016-03-25	Jim Procter	JAL-2034 flag for triggering redraw of overview window...	blob \| commitdiff \| diff to current
2016-01-11	gmungoc	JAL-1989 more unit tests and encapsulation for ColumnSe...	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-10-05	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-10-02	gmungoc	JAL-1815 restore split frame geometry including horizon...	blob \| commitdiff \| diff to current
2015-09-22	Jim Procter	Merge branch 'develop' into Release_2_9_0b1_Branch	blob \| commitdiff \| diff to current
2015-09-14	gmungoc	JAL-1880 handle sequence offsets properly when mapping...	blob \| commitdiff \| diff to current
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