Merge branch 'patch/JAL-4345_pae_epas1_doubleclick' into develop
[jalview.git] / src / jalview / gui / StructureViewerBase.java
2023-11-03 James ProcterJAL-4090 JAL-1551 spotlessApply
2023-10-20 James ProcterJAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide
2023-10-19 James ProcterJAL-4307 View->Ligands submenu, implementation for...
2023-09-05 James ProcterJAL-629 remove structure viewer from the list of struct...
2023-09-05 James ProcterJAL-629 use JalviewStructureDisplayI in place of Struct...
2023-09-01 Ben SoaresJAL-629 Save structure frames in project files when...
2023-08-10 Ben SoaresJAL-629 Change all stdout and stderr output to use...
2023-02-13 Ben SoaresJAL-4125 Move confirmation of closing external viewer...
2023-02-09 Ben SoaresJAL-4125 Additions to JvOptionPane and QuitHandler...
2022-11-09 Ben SoaresMerge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...
2022-11-09 Ben SoaresJAL-3416 Remove all JFrame/JInternalFrame icons (set...
2022-11-04 Ben SoaresJAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...
2022-11-03 Ben SoaresJAL-1988 JAL-3772 Allow other window closing dialogs...
2022-11-03 Ben SoaresJAL-3416 More JInternalFrame icons
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti...
2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu...
2022-02-11 Jim ProcterJAL-3931 fix - escape % symbols after urlencoding
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model...
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characte...
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional...
2021-10-18 Jim ProcterJAL-3904 failing test
2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file...
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur...
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using...
2020-06-29 gmungocJAL-3518 corrected action on pulled up closeViewer()
2020-05-29 gmungocJAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol
2020-05-21 gmungocJAL-3551 copy Jalview features to Pymol 'p' (with pull...
2020-05-19 gmungocMerge branch 'develop' into feature/JAL-3551Pymol
2020-05-15 gmungocJAL-3551 pull up Close Viewer dialog to base class
2020-05-11 gmungocJAL-2422 JAL-3551 viewer text/variables generalised...
2020-04-30 gmungocJAL-3551 save structure viewer session refactorings...
2020-03-13 gmungocJAL-3551 working proof of concept of Jalview driving...
2020-02-28 gmungocJAL-3518 basic refactoring / pull up of superposeStruct...
2020-02-21 gmungocJAL-2422 tidy of methods and parameters
2020-02-20 gmungocJAL-2422 pull-up refactoring of structure commands...
2020-02-04 gmungocJAL-2422 fixed stopProgressBar (broken in pull up refac...
2020-02-04 gmungocJAL-2422 pull up refactoring in preparation for Chimera...
2019-03-13 gmungocMerge branch 'develop' into trialMerge
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating...
2018-07-05 gmungocJAL-3058 missed refactoring of JColorChooser
2018-07-05 gmungocJAL-3058 refactored raising JColorChooser for JS compat...
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern
2018-05-07 Jim ProcterJAL-2960 don’t override a swing method and create infin...
2018-05-04 Jim ProcterJAL-2960 raise the structure view after adding structur...
2018-04-12 gmungocJAL-2944 tidies for review comments
2018-04-09 Jim ProcterJAL-1847 JAL-2944 make superposition step a configurabl...
2018-04-05 Jim ProcterJAL-2944 get viewer’s title via toString()
2018-04-05 Jim ProcterJAL-2944 expose UI update methods in api
2018-04-05 Jim ProcterJAL-2944 remove modal prompt logic and expose methods...
2018-04-05 Jim ProcterJAL-2944 pull up structure viewer discovery routine...
2018-02-07 Jim ProcterJAL-2902 catch case where viewer is closed (therefore...
2018-02-07 Jim ProcterJAL-2902 - isBusy and hasMapping methods so client...
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-12 Jim ProcterJAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview
2017-10-10 Jim ProcterMerge branch 'codereviews/JAL-1990_IProgressIndicator_j...
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu...
2017-05-01 tcofoegbuJAL-2465 bugfix and rerefactor renamed getPdbFile(...
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection...
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set...
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu...
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp...
2016-12-22 gmungocJAL-2360 structure viewers now using ColourMenuHelper...
2016-12-08 gmungocJAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera
2016-11-28 gmungocMerge branch 'develop' into trialMerge
2016-11-25 gmungocMerge branch 'develop' into trialMerge
2016-11-24 tcofoegbuJAL-2326 updated references of JOptionPane to JvOptionPane
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-07-11 gmungocfile format enum wip changes
2015-10-16 Jim ProcterJAL-1925 update source version in license Release_2_9_0b2
2015-10-08 Jim ProcterJAL-1894 update year/version in copyright
2015-09-10 Jim ProcterJAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports
2015-08-19 gmungocJAL-1742 suppress 'add chain' option for Jmol, pull...
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-01-08 gmungocJAL-1588 part work save/restore of Chimera session
2015-01-07 gmungocJAL-1588 refactoring to StructureViewerBase and related