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[jalview.git] / src / jalview / gui / StructureViewerBase.java

2023-11-03	James Procter	JAL-4090 JAL-1551 spotlessApply	blob \| commitdiff
2023-10-20	James Procter	JAL-4307 also report molecule name in tooltip for show... feature/JAL-4307_hetatm_showhide	blob \| commitdiff \| diff to current
2023-10-19	James Procter	JAL-4307 View->Ligands submenu, implementation for...	blob \| commitdiff \| diff to current
2023-09-05	James Procter	JAL-629 remove structure viewer from the list of struct...	blob \| commitdiff \| diff to current
2023-09-05	James Procter	JAL-629 use JalviewStructureDisplayI in place of Struct...	blob \| commitdiff \| diff to current
2023-09-01	Ben Soares	JAL-629 Save structure frames in project files when...	blob \| commitdiff \| diff to current
2023-08-10	Ben Soares	JAL-629 Change all stdout and stderr output to use...	blob \| commitdiff \| diff to current
2023-02-13	Ben Soares	JAL-4125 Move confirmation of closing external viewer...	blob \| commitdiff \| diff to current
2023-02-09	Ben Soares	JAL-4125 Additions to JvOptionPane and QuitHandler...	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	Merge branch 'improvement/JAL-3416_default_to_LIVE_DRAG...	blob \| commitdiff \| diff to current
2022-11-09	Ben Soares	JAL-3416 Remove all JFrame/JInternalFrame icons (set...	blob \| commitdiff \| diff to current
2022-11-04	Ben Soares	JAL-1998 JAL-3772 JAL-3416 Merge conflict resolution...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-1988 JAL-3772 Allow other window closing dialogs...	blob \| commitdiff \| diff to current
2022-11-03	Ben Soares	JAL-3416 More JInternalFrame icons	blob \| commitdiff \| diff to current
2022-03-08	Ben Soares	JAL-3103 Put jalview.jar first in getdown for .properti...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	Merge branch 'update/JAL-3949_jalview_bin_Console_to_cu...	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3931 fix - escape % symbols after urlencoding	blob \| commitdiff \| diff to current
2022-02-11	Jim Procter	JAL-3949 - refactor logging from jalview.bin.Cache...	blob \| commitdiff \| diff to current
2022-02-11	Ben Soares	JAL-3949 Complete new abstracted logging framework...	blob \| commitdiff \| diff to current
2021-12-13	Jim Procter	JAL-3855 JAL-3829 don’t need to make up alphafold model...	blob \| commitdiff \| diff to current
2021-12-08	Jim Procter	JAL-3929 URLencode pdbid to remove problematic characte...	blob \| commitdiff \| diff to current
2021-11-08	Jim Procter	JAL-3921 wait around until session file has been written	blob \| commitdiff \| diff to current
2021-10-18	Jim Procter	JAL-3904 override buildActionMenu to add in additional...	blob \| commitdiff \| diff to current
2021-10-18	Jim Procter	JAL-3904 failing test	blob \| commitdiff \| diff to current
2021-09-14	Jim Procter	JAL-3855 JAL-3829 better checks on PDB or mmCIF file...	blob \| commitdiff \| diff to current
2021-09-14	Jim Procter	JAL-3829 JAL-3855 moved routing for retrieving structur...	blob \| commitdiff \| diff to current
2021-07-27	Jim Procter	JAL-3855 check if an alpha fold ID and retrieve using...	blob \| commitdiff \| diff to current
2020-06-29	gmungoc	JAL-3518 corrected action on pulled up closeViewer()	blob \| commitdiff \| diff to current
2020-05-29	gmungoc	JAL-3551 null pointer defence while structure files... feature/JAL-3551Pymol	blob \| commitdiff \| diff to current
2020-05-21	gmungoc	JAL-3551 copy Jalview features to Pymol 'p' (with pull...	blob \| commitdiff \| diff to current
2020-05-19	gmungoc	Merge branch 'develop' into feature/JAL-3551Pymol	blob \| commitdiff \| diff to current
2020-05-15	gmungoc	JAL-3551 pull up Close Viewer dialog to base class	blob \| commitdiff \| diff to current
2020-05-11	gmungoc	JAL-2422 JAL-3551 viewer text/variables generalised...	blob \| commitdiff \| diff to current
2020-04-30	gmungoc	JAL-3551 save structure viewer session refactorings...	blob \| commitdiff \| diff to current
2020-03-13	gmungoc	JAL-3551 working proof of concept of Jalview driving...	blob \| commitdiff \| diff to current
2020-02-28	gmungoc	JAL-3518 basic refactoring / pull up of superposeStruct...	blob \| commitdiff \| diff to current
2020-02-21	gmungoc	JAL-2422 tidy of methods and parameters	blob \| commitdiff \| diff to current
2020-02-20	gmungoc	JAL-2422 pull-up refactoring of structure commands...	blob \| commitdiff \| diff to current
2020-02-04	gmungoc	JAL-2422 fixed stopProgressBar (broken in pull up refac...	blob \| commitdiff \| diff to current
2020-02-04	gmungoc	JAL-2422 pull up refactoring in preparation for Chimera...	blob \| commitdiff \| diff to current
2019-03-13	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2018-10-09	Jim Procter	JAL-3127 pass reference to AlignViewportI when creating...	blob \| commitdiff \| diff to current
2018-07-05	gmungoc	JAL-3058 missed refactoring of JColorChooser	blob \| commitdiff \| diff to current
2018-07-05	gmungoc	JAL-3058 refactored raising JColorChooser for JS compat...	blob \| commitdiff \| diff to current
2018-06-28	Jim Procter	JAL-3048 TODOs for refactoring JalviewFileChooser pattern	blob \| commitdiff \| diff to current
2018-05-07	Jim Procter	JAL-2960 don’t override a swing method and create infin...	blob \| commitdiff \| diff to current
2018-05-04	Jim Procter	JAL-2960 raise the structure view after adding structur...	blob \| commitdiff \| diff to current
2018-04-12	gmungoc	JAL-2944 tidies for review comments	blob \| commitdiff \| diff to current
2018-04-09	Jim Procter	JAL-1847 JAL-2944 make superposition step a configurabl...	blob \| commitdiff \| diff to current
2018-04-05	Jim Procter	JAL-2944 get viewer’s title via toString()	blob \| commitdiff \| diff to current
2018-04-05	Jim Procter	JAL-2944 expose UI update methods in api	blob \| commitdiff \| diff to current
2018-04-05	Jim Procter	JAL-2944 remove modal prompt logic and expose methods...	blob \| commitdiff \| diff to current
2018-04-05	Jim Procter	JAL-2944 pull up structure viewer discovery routine...	blob \| commitdiff \| diff to current
2018-02-07	Jim Procter	JAL-2902 catch case where viewer is closed (therefore...	blob \| commitdiff \| diff to current
2018-02-07	Jim Procter	JAL-2902 - isBusy and hasMapping methods so client...	blob \| commitdiff \| diff to current
2017-10-27	gmungoc	JAL-1793 spike branch updated to latest	blob \| commitdiff \| diff to current
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...	blob \| commitdiff \| diff to current
2017-10-24	gmungoc	JAL-2738 update spike branch with latest	blob \| commitdiff \| diff to current
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview... features/JAL-2773_dontalwaysrecolourstructureonrepaintofoverview	blob \| commitdiff \| diff to current
2017-10-10	Jim Procter	Merge branch 'codereviews/JAL-1990_IProgressIndicator_j...	blob \| commitdiff \| diff to current
2017-10-03	gmungoc	JAL-2738 copy to spikes/mungo	blob \| commitdiff \| diff to current
2017-08-16	Jim Procter	JAL-2418 source formatting	blob \| commitdiff \| diff to current
2017-06-09	gmungoc	JAL-2446 merged to spike branch	blob \| commitdiff \| diff to current
2017-05-29	Jim Procter	Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...	blob \| commitdiff \| diff to current
2017-05-01	tcofoegbu	JAL-2465 bugfix and rerefactor renamed getPdbFile(...	blob \| commitdiff \| diff to current
2017-04-24	kiramt	JAL-2388 Hidden cols separated from column selection...	blob \| commitdiff \| diff to current
2017-03-07	gmungoc	JAL-2295 status messages for Chimera attributes set...	blob \| commitdiff \| diff to current
2017-03-02	gmungoc	JAL-2295 tweak order and wording of Superpose menu...	blob \| commitdiff \| diff to current
2017-03-02	gmungoc	JAL-2295 make 'Jmol' menu appear; enable/disable Superp...	blob \| commitdiff \| diff to current
2016-12-22	gmungoc	JAL-2360 structure viewers now using ColourMenuHelper...	blob \| commitdiff \| diff to current
2016-12-08	gmungoc	JAL-2358 ensure mappings removed on close Chimera;... bug/JAL-2358phantomChimera	blob \| commitdiff \| diff to current
2016-11-28	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-25	gmungoc	Merge branch 'develop' into trialMerge	blob \| commitdiff \| diff to current
2016-11-24	tcofoegbu	JAL-2326 updated references of JOptionPane to JvOptionPane	blob \| commitdiff \| diff to current
2016-11-10	tcofoegbu	Bugfix to enable accurate chain extraction/association...	blob \| commitdiff \| diff to current
2016-10-25	Jim Procter	JAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch	blob \| commitdiff \| diff to current
2016-07-11	gmungoc	file format enum wip changes	blob \| commitdiff \| diff to current
2015-10-16	Jim Procter	JAL-1925 update source version in license Release_2_9_0b2	blob \| commitdiff \| diff to current
2015-10-08	Jim Procter	JAL-1894 update year/version in copyright	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 Version-Rel Version 2.9 Year-Rel 2015 Licensin...	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 licencing for new files in src	blob \| commitdiff \| diff to current
2015-09-10	Jim Procter	JAL-1645 source formatting and organise imports	blob \| commitdiff \| diff to current
2015-08-19	gmungoc	JAL-1742 suppress 'add chain' option for Jmol, pull...	blob \| commitdiff \| diff to current
2015-06-10	gmungoc	JAL-1764 save Chimera/Jmol state as separate entries...	blob \| commitdiff \| diff to current
2015-01-08	gmungoc	JAL-1588 part work save/restore of Chimera session	blob \| commitdiff \| diff to current
2015-01-07	gmungoc	JAL-1588 refactoring to StructureViewerBase and related	blob \| commitdiff \| diff to current

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