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JAL-1619 don't copy hidden or RNA SS annotations to protein translation
[jalview.git]
/
src
/
jalview
/
gui
/
2014-12-09
gmungoc
JAL-1616 loading of datasets from XML patched
Release_2_8_2_Branch
tree
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commitdiff
2014-12-08
Charles Ofoegbu
JAL-1613 hotfix for duplicated sequence after pairwise...
tree
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commitdiff
2014-12-01
Jim Procter
Merge branch 'bug/JAL-1610refAnnotationsInViews' into...
tree
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commitdiff
2014-11-28
gmungoc
JAL-1610 check reference annotations against alignment...
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1517 formatting
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1611 revise log level to reduce verbosity
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1583 javadoc and fix constructor signature
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1604 formatting
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1604 revised wording and internationalised dialog
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1583 refactored addInternalFrame to allow webservic...
tree
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commitdiff
2014-11-28
Jim Procter
JAL-1517 formatting/tidy
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-1177 JAL-905 cannot recover sequences from dataset...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 avoid writing \0 for chain code
tree
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commitdiff
2014-11-27
Jim Procter
Merge branch 'patchJAL-674_offset' into Release_2_8_2_B...
tree
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commitdiff
2014-11-27
gmungoc
JAL-1603 if Chimera selected in Preferences, warn if...
tree
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commitdiff
2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-27
Jim Procter
JAL-674 JAL-966 new method to retrieve all views
tree
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commitdiff
2014-11-27
Jim Procter
JAL-966 promote getName to an api method
tree
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commitdiff
2014-11-27
Charles Ofoegbu
JAL-1604 Entire sequence submision for MSA job bugfix
tree
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commitdiff
2014-11-27
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-207_pairwise-alignment-context...
tree
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commitdiff
2014-11-26
Charles Ofoegbu
JAL-207 pairwise alignment sequence contexts propergati...
tree
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commitdiff
2014-11-26
Charles Ofoegbu
Merge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
tree
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commitdiff
2014-11-26
Charles Ofoegbu
JAL-998 fixed empty tooltip bug when only one sequence...
tree
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commitdiff
2014-11-26
Jim Procter
JAL-1578 fix logic for showing score when no descriptio...
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 JAL-1578 commented code for displaying annotati...
tree
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commitdiff
2014-11-26
gmungoc
JAL-1528 NullPointer check / more informative PDB fetch...
tree
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commitdiff
2014-11-25
Jim Procter
fix for JAL-689 ensure fastpainting flag set only when...
tree
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commitdiff
2014-11-25
Jim Procter
formatting
tree
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commitdiff
2014-11-25
Jim Procter
patch for JAL-1599 - annotation row constructed by...
tree
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commitdiff
2014-11-25
Charles Ofoegbu
merge commit
features/JAL-1469_svg-output-for-figure-export
tree
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commitdiff
2014-11-25
Charles Ofoegbu
JAL-1469 Added SVGOptions.java for lineart/text renderi...
tree
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commitdiff
2014-11-25
gmungoc
JFAL-1594 fix Undo bug; enum EditCommand.Action; basic...
tree
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commitdiff
2014-11-24
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-24
Jim Procter
JAL-1264 update annotation panel dimensions before...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 interactive editing of secondary structure...
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 remove stdout on parsing RNA
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1152 avoid NPE on null alignment annotation vector
tree
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commitdiff
2014-11-21
gmungoc
JAL-1528 found and readded Colour by Chain ('rainbow...
tree
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commitdiff
2014-11-21
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1592 JAL-1489 avoid invalid RNA structure and disti...
tree
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commitdiff
2014-11-19
gmungoc
JAL-1342 new command-line parameter -jabaws <URL>
tree
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commitdiff
2014-11-19
Charles Ofoegbu
JAL-207 pairwise alignment context patch
tree
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commitdiff
2014-11-19
Charles Ofoegbu
JAL-1522 included installation details in log output
tree
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commitdiff
2014-11-18
Charles Ofoegbu
Merge branch 'bug/JAL-998_wrap-sequence-tooltip' into...
tree
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commitdiff
2014-11-18
Charles Ofoegbu
JAL-998 tooltip wrapping
tree
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commitdiff
2014-11-18
gmungoc
JAL-1349 rebuild Web Service menu after add/delete...
tree
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commitdiff
2014-11-18
gmungoc
JAL-1349 refresh menu presets after 'create' new
tree
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commitdiff
2014-11-18
gmungoc
Merge branch 'Release_2_8_2_Branch' of https://source...
tree
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commitdiff
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into Release_2_...
tree
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1581 Tooltip slimmed down, Help button added on...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1586 chimera file chooser added, validate on OK...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
Merge branch 'bug/JAL-1570_unable-to-add-JABAWS-Server...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
updated documentation
tree
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commitdiff
2014-11-17
gmungoc
JAL-1580 size parameters dialog to height of Desktop
tree
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commitdiff
2014-11-17
Charles Ofoegbu
JAL-1570 patch to enable adding a webservice which...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 Chimera Help doc + fixes to setting colours
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 new Preference CHIMERA_PATH (Preferences ...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 Chimera tidy errors, focus after align, close...
tree
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commitdiff
2014-11-17
gmungoc
JAL-1528 bug fixes and adjustments to Chimera interface
tree
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commitdiff
2014-11-17
Jim Procter
Merge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc...
tree
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commitdiff
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Added support for SVG Export
tree
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commitdiff
2014-11-11
gmungoc
JAL-1527 opening a project saved with JMol should use...
tree
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commitdiff
2014-11-05
gmungoc
JAL-1152 new Structure tab on Preferences for SS deriva...
tree
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commitdiff
2014-11-03
gmungoc
Merge branch 'features/JAL-1152annotationSorting' of...
tree
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commitdiff
2014-11-03
gmungoc
JAL-1152 annotation sorting preferences and help docume...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'bug/JAL-1250_redundance-removal' into...
tree
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commitdiff
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotation...
tree
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commitdiff
2014-11-03
Jim Procter
fix for JAL-1579 create threshold object for annotation...
tree
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commitdiff
2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 bug fix for 'no sort' case + tests for autocal...
tree
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commitdiff
2014-10-31
gmungoc
JAL-1152 menu tweaks plus new option to put Autocalc...
tree
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commitdiff
2014-10-30
Jim Procter
Merge branch 'develop' into features/ssFromPDBEntry
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 with sticky annotation sort order that updates...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
tree
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commitdiff
2014-10-30
Jim Procter
JAL-1551 format and tidy
tree
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commitdiff
2014-10-30
gmungoc
JAL-1152 prototype of new Annotations menu with sort...
tree
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commitdiff
2014-10-28
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2014-10-28
gmungoc
JAL-1264 refactor to add menu options to _both_ sequenc...
tree
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commitdiff
2014-10-28
Charles Ofoegbu
2_8_2_Branch merge
tree
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commitdiff
2014-10-28
Charles Ofoegbu
JAL-1250 Redundancy removal bug fix for Applet version
tree
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commitdiff
2014-10-27
Jim Procter
Merge branch 'Release_2_8_2_Branch' into merge_r282_dev
tree
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commitdiff
2014-10-27
Charles Ofoegbu
Updated RedundancyPanel.java to referesh the tree view...
tree
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commitdiff
2014-10-27
Charles Ofoegbu
Patch for redundancy removal
tree
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commitdiff
2014-10-23
Jim Procter
patch fixes JAL-1558
tree
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commitdiff
2014-10-23
gmungoc
JAL-1264 further refactoring and tests
tree
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commitdiff
2014-10-21
Jim Procter
JAL-1551 reinstate missing import
tree
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commitdiff
2014-10-21
Jim Procter
JAL-674 initial implementation - only need to extract...
tree
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commitdiff
2014-10-16
Jim Procter
Merge branch 'feature/JAL-674_dssp' into features/JAL...
features/JAL-1264_showHideAnnotations
tree
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commitdiff
2014-10-10
gmungoc
JAL-1481 wrap tooltip in html
tree
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commitdiff
2014-10-10
darolmar
JAL-1420
tree
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commitdiff
2014-10-10
darolmar
JAL-1355
tree
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commitdiff
2014-10-09
Jim Procter
patch fixes JAL-1558
tree
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commitdiff
2014-10-08
gmungoc
Merge branch 'Release_2_8_2_Branch' into
tree
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commitdiff
2014-10-07
Jim Procter
JAL-1557 partial implementation - need to think about...
tree
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commitdiff
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