JAL-1611 revise log level to reduce verbosity

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index f80f341..bca5051 100755 (executable)
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -658,7 +658,7 @@ public class Jalview
               public void run()
               {
                 Cache.log
-                        .info("Initialising googletracker for usage stats.");
+                        .debug("Initialising googletracker for usage stats.");
                 Cache.initGoogleTracker();
                 Cache.log.debug("Tracking enabled.");
               }
@@ -666,7 +666,7 @@ public class Jalview
             {
               public void run()
               {
-                Cache.log.info("Not enabling Google Tracking.");
+                Cache.log.debug("Not enabling Google Tracking.");
               }
             }, null, true);
     desktop.addDialogThread(prompter);

diff --git a/src/jalview/gui/BlogReader.java b/src/jalview/gui/BlogReader.java
index 7a1065d..0de4adf 100644 (file)
--- a/src/jalview/gui/BlogReader.java
+++ b/src/jalview/gui/BlogReader.java
@@ -198,7 +198,7 @@ public class BlogReader extends JPanel
       {
         if (parent != null)
         {
-          Cache.log.info("News window closed.");
+          Cache.log.debug("News window closed.");
           jd = null;
           parent.showNews(false);
         }
@@ -246,7 +246,7 @@ public class BlogReader extends JPanel
 
   public BlogReader(Desktop desktop)
   {
-    Cache.log.info("Constructing news reader.");
+    Cache.log.debug("Constructing news reader.");
 
     parent = desktop;
     _channelModel = new ChannelListModel();
@@ -275,10 +275,10 @@ public class BlogReader extends JPanel
     if (setvisible)
     {
 
-      Cache.log.info("Will show jalview news automatically");
+      Cache.log.debug("Will show jalview news automatically");
       showNews();
     }
-    Cache.log.info("Completed construction of reader.");
+    Cache.log.debug("Completed construction of reader.");
 
   }
 
@@ -334,7 +334,7 @@ public class BlogReader extends JPanel
           jd.initDialogFrame(me, false, false, MessageManager.getString("label.news_from_jalview"),
                   bounds.width, bounds.height);
           jd.frame.setModalExclusionType(ModalExclusionType.NO_EXCLUDE);
-          Cache.log.info("Displaying news.");
+          Cache.log.debug("Displaying news.");
           jd.waitForInput();
         }
       }
@@ -421,7 +421,7 @@ public class BlogReader extends JPanel
       {
         jalview.bin.Cache.setDateProperty("JALVIEW_NEWS_RSS_LASTMODIFIED",
                 lastDate);
-        jalview.bin.Cache.log.info("Saved last read date as "
+        jalview.bin.Cache.log.debug("Saved last read date as "
                 + jalview.bin.Cache.date_format.format(lastDate));
 
       }
@@ -758,16 +758,16 @@ public class BlogReader extends JPanel
               + jalview.bin.Cache.date_format.format(lastread.getTime()));
       if (me.isNewsNew())
       {
-        Cache.log.info("There is news to read.");
+        Cache.log.debug("There is news to read.");
       }
       else
       {
-        Cache.log.info("There is no new news.");
+        Cache.log.debug("There is no new news.");
         me.xf.setTitle("Testing : Last read is " + me.lastDate);
         me.showNews();
         me.xf.toFront();
       }
-      Cache.log.info("Waiting for closure.");
+      Cache.log.debug("Waiting for closure.");
       do
       {
         try
@@ -781,11 +781,11 @@ public class BlogReader extends JPanel
 
       if (me.isNewsNew())
       {
-        Cache.log.info("Still new news after reader displayed.");
+        Cache.log.debug("Still new news after reader displayed.");
       }
       if (lastread.getTime().before(me.lastDate))
       {
-        Cache.log.info("The news was read.");
+        Cache.log.debug("The news was read.");
         lastread.setTime(me.lastDate);
       }
       else

diff --git a/src/jalview/gui/WsParamSetManager.java b/src/jalview/gui/WsParamSetManager.java
index 3322d6a..46d93b0 100644 (file)
--- a/src/jalview/gui/WsParamSetManager.java
+++ b/src/jalview/gui/WsParamSetManager.java
@@ -159,7 +159,7 @@ public class WsParamSetManager implements ParamManager
     {
       if (filename != null && !((outfile = new File(filename)).canWrite()))
       {
-        Cache.log.info("Can't write to " + filename
+        Cache.log.warn("Can't write to " + filename
                 + " - Prompting for new file to write to.");
         filename = null;
       }

diff --git a/src/jalview/ws/DasSequenceFeatureFetcher.java b/src/jalview/ws/DasSequenceFeatureFetcher.java
index 8a7bcbc..64181ca 100644 (file)
--- a/src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/src/jalview/ws/DasSequenceFeatureFetcher.java
@@ -496,13 +496,13 @@ public class DasSequenceFeatureFetcher
                 } catch (Exception ex)
                 {
                   Cache.log
-                          .info("Error in 'experimental' mapping of features. Please try to reproduce and then report info to jalview-discuss@jalview.org.");
-                  Cache.log.info("Mapping feature from " + f.getBegin()
+                          .warn("Error in 'experimental' mapping of features. Please try to reproduce and then report info to jalview-discuss@jalview.org.");
+                  Cache.log.warn("Mapping feature from " + f.getBegin()
                           + " to " + f.getEnd() + " in dbref "
                           + dbref.getAccessionId() + " in "
                           + dbref.getSource());
-                  Cache.log.info("using das Source " + source);
-                  Cache.log.info("Exception", ex);
+                  Cache.log.warn("using das Source " + source);
+                  Cache.log.warn("Exception", ex);
                 }
 
                 if (vf != null)

diff --git a/src/jalview/ws/jws2/JabaWsServerQuery.java b/src/jalview/ws/jws2/JabaWsServerQuery.java
index 74dce4d..832a2cb 100644 (file)
--- a/src/jalview/ws/jws2/JabaWsServerQuery.java
+++ b/src/jalview/ws/jws2/JabaWsServerQuery.java
@@ -212,7 +212,7 @@ public class JabaWsServerQuery implements Runnable
       else
       {
         jws2Discoverer.addInvalidServiceUrl(jwsserver);
-        Cache.log.info("Ignoring invalid Jws2 service url " + jwsserver);
+        Cache.log.warn("Ignoring invalid Jws2 service url " + jwsserver);
       }
     } catch (Exception e)
     {

diff --git a/src/jalview/ws/jws2/Jws2Discoverer.java b/src/jalview/ws/jws2/Jws2Discoverer.java
index a111d68..7a8eee9 100644 (file)
--- a/src/jalview/ws/jws2/Jws2Discoverer.java
+++ b/src/jalview/ws/jws2/Jws2Discoverer.java
@@ -705,7 +705,7 @@ public class Jws2Discoverer implements Runnable, WSMenuEntryProviderI
           }
           else
           {
-            Cache.log.info("Ignoring duplicate url " + url + " in "
+            Cache.log.warn("Ignoring duplicate url " + url + " in "
                     + JWS2HOSTURLS + " list");
           }
         } catch (MalformedURLException ex)