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Merge remote-tracking branch 'origin/tasks/JAL-3070_wsinterfaces' into alpha/JAL...
[jalview.git]
/
src
/
jalview
/
gui
/
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 javadoc
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
tree
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commitdiff
2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
tree
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commitdiff
2018-05-23
Jim Procter
fix for JAL-2991 - we could do better :/
bug/JAL-2991_exporttosvgwrapview
tree
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commitdiff
2018-05-22
gmungoc
JAL-2716 fix to reset choice parameter on Revert
tree
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commitdiff
2018-05-22
gmungoc
JAL-2716 fix broken checkIfModified behaviour
tree
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commitdiff
2018-05-22
gmungoc
JAL-2629 method refactor and menu tidying
tree
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commitdiff
2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
bug/JAL-797
tree
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commitdiff
2018-05-21
gmungoc
JAL-437 remove code duplicated by merge
features/JAL-2814ftsHelp
tree
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commitdiff
2018-05-21
gmungoc
JAL-2814 help links from PDB and Uniprot FTS panels
tree
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commitdiff
2018-05-15
gmungoc
JAL-1264 exclude score-only from 'Add Reference Annotat...
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 refactoring to reduce code duplication
tree
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commitdiff
2018-05-14
gmungoc
JAL-2711 show short file names in search database combo box
tree
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commitdiff
2018-05-14
gmungoc
JAL-2989 support value display names for Option or...
tree
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commitdiff
2018-05-11
gmungoc
JAL-2985 show label instead of checkbox for a required...
tree
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commitdiff
2018-05-10
gmungoc
JAL-591 reduced updating by checking/setting 'updating...
tree
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commitdiff
2018-05-10
gmungoc
JAL-2629 handle decline 'Add Database'
tree
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commitdiff
2018-05-10
gmungoc
JAL-591 show choice list with a single option
tree
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commitdiff
2018-05-09
gmungoc
JAL-2714 HMMSearch cutoff by E-Value, Score or None
tree
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commitdiff
2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
tree
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commitdiff
2018-05-08
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 unit test for save and restore PCA
features/JAL-1767pcaInProject
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 scheme DoubleMatrix type includes D and E...
tree
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commitdiff
2018-05-07
gmungoc
JAL-2982 use configured background colour in PCA image...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 save PCA D and E vectors instead of 'details...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2975 Shift-arrow keys to rotate PCA incrementally
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 schema and Castor changes for Save PCA in...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
tree
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commitdiff
2018-04-27
gmungoc
JAL-2964 tree@linkToAllViews attribute added to project...
tree
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commitdiff
2018-04-27
gmungoc
JAL-2963 correctly dim PCA points with negative z-coord...
tree
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commitdiff
2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 rename run method (as not a Runnable)
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 remove Change Parameters menu from PCA panel
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 option to offer BLOSUM62 for nucleotide PCA
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 code tidying/documentation (non-functional...
tree
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commitdiff
2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
tree
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commitdiff
2018-04-24
gmungoc
JAL-591 use constant for Preferences key
tree
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commitdiff
2018-04-24
gmungoc
JAL-2616 unused field removed
tree
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commitdiff
2018-04-23
gmungoc
JAL-2956 save/restore HMMER profile to/from Jalview...
tree
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commitdiff
2018-04-23
gmungoc
JAL-2957 don't validate input on arrow keys
tree
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commitdiff
2018-04-23
gmungoc
JAL-591 ensure slider hidden if text input field only
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 slider scale factor now derived from min-max...
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 tidy and comment code
tree
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commitdiff
2018-04-20
gmungoc
JAL-591 OptionBox FlowLayout, tweaks to wrapping of...
tree
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commitdiff
2018-04-19
gmungoc
JAL-591 utility method renamed and slightly generalised
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-04-17
gmungoc
Merge branch 'features/mchmmer' of https://source.jalvi...
tree
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commitdiff
2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
tree
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commitdiff
2018-04-17
Mungo Carstairs
JAL-2937 working Cygwin bash execution of hmmbuild...
tree
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commitdiff
2018-04-16
gmungoc
JAL-2629 JAL-2937 remove redundant is/setHMMConsensusSe...
tree
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commitdiff
2018-04-16
gmungoc
JAL-2937 use preferences for presets, simplify some...
tree
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commitdiff
2018-04-12
gmungoc
JAL-1847 minor post-review updates
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-09
Mungo Carstairs
JAL-2937 Cygwin path preference, method refactoring
tree
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commitdiff
2018-04-09
Mungo Carstairs
JAL-2069 typo
tree
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commitdiff
2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 allow StructureViewer proxy to be created...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 get viewer’s title via toString()
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
tree
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commitdiff
2018-03-30
gmungoc
JAL-2629 combine with/without defaults in one method...
tree
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commitdiff
2018-03-30
gmungoc
JAL-2939 field/method naming more consistent
tree
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commitdiff
2018-03-30
gmungoc
JAL-2629 select HMM selects sequence under cursor
tree
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commitdiff
2018-03-26
gmungoc
JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
tree
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commitdiff
2018-03-26
gmungoc
JAL-2939 unused action handler methods removed
tree
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commitdiff
2018-03-22
gmungoc
JAL-914 singleton HelpBroker to avoid multiple help...
bug/JAL-914multipleHelpScreens
tree
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commitdiff
2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
tree
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commitdiff
2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-03-21
Jim Procter
JAL-2754 fix eclipse compilation error about referencin...
tree
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commitdiff
2018-03-21
gmungoc
JAL-2629 tweaks to Information annotation updating
tree
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commitdiff
2018-03-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-03-16
gmungoc
JAL-2620 alternative genetic code translation tables
tree
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commitdiff
2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-03-16
gmungoc
JAL-2922 update FeatureRenderer and repaint feature...
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
tree
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commitdiff
2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 pass viewport in Finder constructor, find...
bug/JAL-2839findWithHidden
tree
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commitdiff
2018-03-14
gmungoc
JAL-2933 gui and applet Finder hold a FinderI per viewport
tree
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commitdiff
2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
tree
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commitdiff
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