<xs:sequence>
<xs:element name="pairwiseMatrix" type="jv:DoubleMatrix" />
<xs:element name="tridiagonalMatrix" type="jv:DoubleMatrix" />
- <xs:element name="tridiagonalD" type="jv:DoubleVector" />
- <xs:element name="tridiagonalE" type="jv:DoubleVector" />
<xs:element name="eigenMatrix" type="jv:DoubleMatrix" />
- <xs:element name="eigenMatrixD" type="jv:DoubleVector" />
</xs:sequence>
</xs:complexType>
<xs:complexType name="DoubleVector">
<xs:sequence>
- <xs:element name="d" type="xs:double" minOccurs="0" maxOccurs="unbounded" />
+ <xs:element name="v" type="xs:double" minOccurs="0" maxOccurs="unbounded" />
</xs:sequence>
</xs:complexType>
<xs:complexType name="DoubleMatrix">
<xs:sequence>
<xs:element name="row" type="jv:DoubleVector" minOccurs="0" maxOccurs="unbounded" />
+ <xs:element name="D" minOccurs="0" type="jv:DoubleVector" />
+ <xs:element name="E" minOccurs="0" type="jv:DoubleVector" />
</xs:sequence>
<xs:attribute name="rows" type="xs:int" />
<xs:attribute name="columns" type="xs:int" />
import jalview.schemabinding.version2.Axis;
import jalview.schemabinding.version2.CalcIdParam;
import jalview.schemabinding.version2.CompoundMatcher;
+import jalview.schemabinding.version2.D;
import jalview.schemabinding.version2.DBRef;
import jalview.schemabinding.version2.DoubleMatrix;
+import jalview.schemabinding.version2.E;
import jalview.schemabinding.version2.EigenMatrix;
-import jalview.schemabinding.version2.EigenMatrixD;
import jalview.schemabinding.version2.Features;
import jalview.schemabinding.version2.Group;
import jalview.schemabinding.version2.HiddenColumns;
import jalview.schemabinding.version2.StructureState;
import jalview.schemabinding.version2.ThresholdLine;
import jalview.schemabinding.version2.Tree;
-import jalview.schemabinding.version2.TridiagonalD;
-import jalview.schemabinding.version2.TridiagonalE;
import jalview.schemabinding.version2.TridiagonalMatrix;
import jalview.schemabinding.version2.UserColours;
import jalview.schemabinding.version2.Viewport;
}
/*
- * raw PCA data
+ * raw PCA data (note we are not restoring PCA inputs here -
+ * alignment view, score model, similarity parameters)
*/
PcaData data = new PcaData();
viewer.setPcaData(data);
PCA pca = pcaModel.getPcaData();
PairwiseMatrix pm = new PairwiseMatrix();
- MatrixI m = pca.getPairwiseScores();
- saveDoubleMatrix(m, pm);
+ saveDoubleMatrix(pca.getPairwiseScores(), pm);
data.setPairwiseMatrix(pm);
TridiagonalMatrix tm = new TridiagonalMatrix();
- m = pca.getTridiagonal();
- saveDoubleMatrix(m, tm);
+ saveDoubleMatrix(pca.getTridiagonal(), tm);
data.setTridiagonalMatrix(tm);
- TridiagonalD tridiagonalD = new TridiagonalD();
- tridiagonalD.setD(m.getD());
- data.setTridiagonalD(tridiagonalD);
- TridiagonalE tridiagonalE = new TridiagonalE();
- tridiagonalE.setD(m.getE());
- data.setTridiagonalE(tridiagonalE);
-
- m = pca.getEigenmatrix();
+
EigenMatrix eigenMatrix = new EigenMatrix();
data.setEigenMatrix(eigenMatrix);
- saveDoubleMatrix(m, eigenMatrix);
- EigenMatrixD eigenmatrixD = new EigenMatrixD();
- eigenmatrixD.setD(m.getD());
- data.setEigenMatrixD(eigenmatrixD);
+ saveDoubleMatrix(pca.getEigenmatrix(), eigenMatrix);
jms.addPcaViewer(viewer);
} catch (Throwable t)
}
/**
- * Stores values from a matrix into an XML element
+ * Stores values from a matrix into an XML element, including (if present) the
+ * D or E vectors
*
* @param m
* @param xmlMatrix
Row row = new Row();
for (int j = 0; j < m.width(); j++)
{
- row.addD(m.getValue(i, j));
+ row.addV(m.getValue(i, j));
}
xmlMatrix.addRow(row);
}
+ if (m.getD() != null)
+ {
+ D dVector = new D();
+ dVector.setV(m.getD());
+ xmlMatrix.setD(dVector);
+ }
+ if (m.getE() != null)
+ {
+ E eVector = new E();
+ eVector.setV(m.getE());
+ xmlMatrix.setE(eVector);
+ }
}
/**
- * Loads XML matrix data into a new Matrix object
+ * Loads XML matrix data into a new Matrix object, including the D and/or E
+ * vectors (if present)
*
* @param mData
* @return
for (int i = 0; i < rows; i++)
{
- vals[i] = mData.getRow(i).getD();
+ vals[i] = mData.getRow(i).getV();
}
MatrixI m = new Matrix(vals);
+
+ if (mData.getD() != null) {
+ m.setD(mData.getD().getV());
+ }
+ if (mData.getE() != null)
+ {
+ m.setE(mData.getE().getV());
+ }
+
return m;
}
pca.setPairwiseScores(pairwise);
MatrixI triDiag = loadDoubleMatrix(pcaData.getTridiagonalMatrix());
- triDiag.setD(pcaData.getTridiagonalD().getD());
- triDiag.setE(pcaData.getTridiagonalE().getD());
pca.setTridiagonal(triDiag);
MatrixI result = loadDoubleMatrix(pcaData.getEigenMatrix());
- result.setD(pcaData.getEigenMatrixD().getD());
pca.setEigenmatrix(result);
panel.pcaModel.setPCA(pca);
-#Mon May 07 09:17:08 BST 2018
-jalview.schemabinding.version2.SeqPointMax=jalview.schemabinding.version2.descriptors.SeqPointMaxDescriptor
-jalview.schemabinding.version2.ThresholdLine=jalview.schemabinding.version2.descriptors.ThresholdLineDescriptor
-jalview.schemabinding.version2.SequenceSetProperties=jalview.schemabinding.version2.descriptors.SequenceSetPropertiesDescriptor
-jalview.schemabinding.version2.StructureState=jalview.schemabinding.version2.descriptors.StructureStateDescriptor
+#Mon May 07 14:44:01 BST 2018
+jalview.schemabinding.version2.SecondaryStructure=jalview.schemabinding.version2.descriptors.SecondaryStructureDescriptor
+jalview.schemabinding.version2.MapListFrom=jalview.schemabinding.version2.descriptors.MapListFromDescriptor
+jalview.schemabinding.version2.DoubleVector=jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor
+jalview.schemabinding.version2.Features=jalview.schemabinding.version2.descriptors.FeaturesDescriptor
+jalview.schemabinding.version2.MapListType=jalview.schemabinding.version2.descriptors.MapListTypeDescriptor
+jalview.schemabinding.version2.CompoundMatcher=jalview.schemabinding.version2.descriptors.CompoundMatcherDescriptor
jalview.schemabinding.version2.CalcIdParam=jalview.schemabinding.version2.descriptors.CalcIdParamDescriptor
-jalview.schemabinding.version2.Tree=jalview.schemabinding.version2.descriptors.TreeDescriptor
-jalview.schemabinding.version2.JalviewModel=jalview.schemabinding.version2.descriptors.JalviewModelDescriptor
-jalview.schemabinding.version2.SequenceType=jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor
-jalview.schemabinding.version2.TridiagonalE=jalview.schemabinding.version2.descriptors.TridiagonalEDescriptor
-jalview.schemabinding.version2.SequencePoint=jalview.schemabinding.version2.descriptors.SequencePointDescriptor
-jalview.schemabinding.version2.OtherData=jalview.schemabinding.version2.descriptors.OtherDataDescriptor
-jalview.schemabinding.version2.Setting=jalview.schemabinding.version2.descriptors.SettingDescriptor
-jalview.schemabinding.version2.TridiagonalD=jalview.schemabinding.version2.descriptors.TridiagonalDDescriptor
jalview.schemabinding.version2.Axis=jalview.schemabinding.version2.descriptors.AxisDescriptor
+jalview.schemabinding.version2.E=jalview.schemabinding.version2.descriptors.EDescriptor
+jalview.schemabinding.version2.D=jalview.schemabinding.version2.descriptors.DDescriptor
jalview.schemabinding.version2.AlcodonFrame=jalview.schemabinding.version2.descriptors.AlcodonFrameDescriptor
-jalview.schemabinding.version2.AnnotationElement=jalview.schemabinding.version2.descriptors.AnnotationElementDescriptor
+jalview.schemabinding.version2.DBRef=jalview.schemabinding.version2.descriptors.DBRefDescriptor
+jalview.schemabinding.version2.JSeq=jalview.schemabinding.version2.descriptors.JSeqDescriptor
+jalview.schemabinding.version2.VAMSAS=jalview.schemabinding.version2.descriptors.VAMSASDescriptor
+jalview.schemabinding.version2.SequencePoint=jalview.schemabinding.version2.descriptors.SequencePointDescriptor
+jalview.schemabinding.version2.AlcodMap=jalview.schemabinding.version2.descriptors.AlcodMapDescriptor
+jalview.schemabinding.version2.TridiagonalMatrix=jalview.schemabinding.version2.descriptors.TridiagonalMatrixDescriptor
jalview.schemabinding.version2.Row=jalview.schemabinding.version2.descriptors.RowDescriptor
+jalview.schemabinding.version2.PairwiseMatrix=jalview.schemabinding.version2.descriptors.PairwiseMatrixDescriptor
+jalview.schemabinding.version2.RnaViewer=jalview.schemabinding.version2.descriptors.RnaViewerDescriptor
+jalview.schemabinding.version2.Group=jalview.schemabinding.version2.descriptors.GroupDescriptor
+jalview.schemabinding.version2.PcaViewer=jalview.schemabinding.version2.descriptors.PcaViewerDescriptor
+jalview.schemabinding.version2.JalviewModel=jalview.schemabinding.version2.descriptors.JalviewModelDescriptor
+jalview.schemabinding.version2.JalviewModelSequence=jalview.schemabinding.version2.descriptors.JalviewModelSequenceDescriptor
+jalview.schemabinding.version2.StructureState=jalview.schemabinding.version2.descriptors.StructureStateDescriptor
+jalview.schemabinding.version2.TridiagonalE=jalview.schemabinding.version2.descriptors.TridiagonalEDescriptor
+jalview.schemabinding.version2.TridiagonalD=jalview.schemabinding.version2.descriptors.TridiagonalDDescriptor
jalview.schemabinding.version2.FeatureMatcherSet=jalview.schemabinding.version2.descriptors.FeatureMatcherSetDescriptor
+jalview.schemabinding.version2.VamsasModel=jalview.schemabinding.version2.descriptors.VamsasModelDescriptor
+jalview.schemabinding.version2.ThresholdLine=jalview.schemabinding.version2.descriptors.ThresholdLineDescriptor
+jalview.schemabinding.version2.MatcherSet=jalview.schemabinding.version2.descriptors.MatcherSetDescriptor
+jalview.schemabinding.version2.JalviewUserColours=jalview.schemabinding.version2.descriptors.JalviewUserColoursDescriptor
+jalview.schemabinding.version2.FeatureSettings=jalview.schemabinding.version2.descriptors.FeatureSettingsDescriptor
+jalview.schemabinding.version2.AnnotationColours=jalview.schemabinding.version2.descriptors.AnnotationColoursDescriptor
+jalview.schemabinding.version2.UserColours=jalview.schemabinding.version2.descriptors.UserColoursDescriptor
+jalview.schemabinding.version2.PcaData=jalview.schemabinding.version2.descriptors.PcaDataDescriptor
+jalview.schemabinding.version2.Feature=jalview.schemabinding.version2.descriptors.FeatureDescriptor
+jalview.schemabinding.version2.FeatureMatcher=jalview.schemabinding.version2.descriptors.FeatureMatcherDescriptor
+jalview.schemabinding.version2.EigenMatrixE=jalview.schemabinding.version2.descriptors.EigenMatrixEDescriptor
+jalview.schemabinding.version2.EigenMatrixD=jalview.schemabinding.version2.descriptors.EigenMatrixDDescriptor
+jalview.schemabinding.version2.Annotation=jalview.schemabinding.version2.descriptors.AnnotationDescriptor
jalview.schemabinding.version2.EigenMatrix=jalview.schemabinding.version2.descriptors.EigenMatrixDescriptor
-jalview.schemabinding.version2.SecondaryStructure=jalview.schemabinding.version2.descriptors.SecondaryStructureDescriptor
-jalview.schemabinding.version2.MatchCondition=jalview.schemabinding.version2.descriptors.MatchConditionDescriptor
-jalview.schemabinding.version2.SequenceSet=jalview.schemabinding.version2.descriptors.SequenceSetDescriptor
-jalview.schemabinding.version2.Viewport=jalview.schemabinding.version2.descriptors.ViewportDescriptor
-jalview.schemabinding.version2.RnaViewer=jalview.schemabinding.version2.descriptors.RnaViewerDescriptor
-jalview.schemabinding.version2.MapListType=jalview.schemabinding.version2.descriptors.MapListTypeDescriptor
+jalview.schemabinding.version2.HiddenColumns=jalview.schemabinding.version2.descriptors.HiddenColumnsDescriptor
jalview.schemabinding.version2.Property=jalview.schemabinding.version2.descriptors.PropertyDescriptor
-jalview.schemabinding.version2.UserColourScheme=jalview.schemabinding.version2.descriptors.UserColourSchemeDescriptor
-jalview.schemabinding.version2.DoubleMatrix=jalview.schemabinding.version2.descriptors.DoubleMatrixDescriptor
-jalview.schemabinding.version2.DBRef=jalview.schemabinding.version2.descriptors.DBRefDescriptor
-jalview.schemabinding.version2.AlcodMap=jalview.schemabinding.version2.descriptors.AlcodMapDescriptor
-jalview.schemabinding.version2.SymmMatrix=jalview.schemabinding.version2.descriptors.SymmMatrixDescriptor
-jalview.schemabinding.version2.Annotation=jalview.schemabinding.version2.descriptors.AnnotationDescriptor
-jalview.schemabinding.version2.SeqPointMin=jalview.schemabinding.version2.descriptors.SeqPointMinDescriptor
-jalview.schemabinding.version2.JSeq=jalview.schemabinding.version2.descriptors.JSeqDescriptor
-jalview.schemabinding.version2.MatcherSet=jalview.schemabinding.version2.descriptors.MatcherSetDescriptor
+jalview.schemabinding.version2.Tree=jalview.schemabinding.version2.descriptors.TreeDescriptor
+jalview.schemabinding.version2.Pdbentry=jalview.schemabinding.version2.descriptors.PdbentryDescriptor
+jalview.schemabinding.version2.OtherData=jalview.schemabinding.version2.descriptors.OtherDataDescriptor
jalview.schemabinding.version2.Sequence=jalview.schemabinding.version2.descriptors.SequenceDescriptor
-jalview.schemabinding.version2.Filter=jalview.schemabinding.version2.descriptors.FilterDescriptor
-jalview.schemabinding.version2.WebServiceParameterSet=jalview.schemabinding.version2.descriptors.WebServiceParameterSetDescriptor
-jalview.schemabinding.version2.Alcodon=jalview.schemabinding.version2.descriptors.AlcodonDescriptor
-jalview.schemabinding.version2.AnnotationColours=jalview.schemabinding.version2.descriptors.AnnotationColoursDescriptor
-jalview.schemabinding.version2.TridiagonalMatrix=jalview.schemabinding.version2.descriptors.TridiagonalMatrixDescriptor
-jalview.schemabinding.version2.Pdbids=jalview.schemabinding.version2.descriptors.PdbidsDescriptor
jalview.schemabinding.version2.AnnotationColourScheme=jalview.schemabinding.version2.descriptors.AnnotationColourSchemeDescriptor
+jalview.schemabinding.version2.Setting=jalview.schemabinding.version2.descriptors.SettingDescriptor
+jalview.schemabinding.version2.Pdbids=jalview.schemabinding.version2.descriptors.PdbidsDescriptor
+jalview.schemabinding.version2.JGroup=jalview.schemabinding.version2.descriptors.JGroupDescriptor
jalview.schemabinding.version2.Mapping=jalview.schemabinding.version2.descriptors.MappingDescriptor
-jalview.schemabinding.version2.PcaData=jalview.schemabinding.version2.descriptors.PcaDataDescriptor
-jalview.schemabinding.version2.PcaViewer=jalview.schemabinding.version2.descriptors.PcaViewerDescriptor
-jalview.schemabinding.version2.CompoundMatcher=jalview.schemabinding.version2.descriptors.CompoundMatcherDescriptor
-jalview.schemabinding.version2.JalviewModelSequence=jalview.schemabinding.version2.descriptors.JalviewModelSequenceDescriptor
-jalview.schemabinding.version2.Group=jalview.schemabinding.version2.descriptors.GroupDescriptor
-jalview.schemabinding.version2.MappingChoice=jalview.schemabinding.version2.descriptors.MappingChoiceDescriptor
-jalview.schemabinding.version2.Feature=jalview.schemabinding.version2.descriptors.FeatureDescriptor
-jalview.schemabinding.version2.UserColours=jalview.schemabinding.version2.descriptors.UserColoursDescriptor
-jalview.schemabinding.version2.Colour=jalview.schemabinding.version2.descriptors.ColourDescriptor
+jalview.schemabinding.version2.SequenceSet=jalview.schemabinding.version2.descriptors.SequenceSetDescriptor
+jalview.schemabinding.version2.PcaDataType=jalview.schemabinding.version2.descriptors.PcaDataTypeDescriptor
+jalview.schemabinding.version2.SeqPointMin=jalview.schemabinding.version2.descriptors.SeqPointMinDescriptor
+jalview.schemabinding.version2.MatchCondition=jalview.schemabinding.version2.descriptors.MatchConditionDescriptor
+jalview.schemabinding.version2.SymmMatrix=jalview.schemabinding.version2.descriptors.SymmMatrixDescriptor
+jalview.schemabinding.version2.WebServiceParameterSet=jalview.schemabinding.version2.descriptors.WebServiceParameterSetDescriptor
jalview.schemabinding.version2.PdbentryItem=jalview.schemabinding.version2.descriptors.PdbentryItemDescriptor
-jalview.schemabinding.version2.MapListFrom=jalview.schemabinding.version2.descriptors.MapListFromDescriptor
-jalview.schemabinding.version2.FeatureSettings=jalview.schemabinding.version2.descriptors.FeatureSettingsDescriptor
-jalview.schemabinding.version2.JGroup=jalview.schemabinding.version2.descriptors.JGroupDescriptor
+jalview.schemabinding.version2.Viewport=jalview.schemabinding.version2.descriptors.ViewportDescriptor
+jalview.schemabinding.version2.DoubleMatrix=jalview.schemabinding.version2.descriptors.DoubleMatrixDescriptor
+jalview.schemabinding.version2.Colour=jalview.schemabinding.version2.descriptors.ColourDescriptor
+jalview.schemabinding.version2.SequenceSetProperties=jalview.schemabinding.version2.descriptors.SequenceSetPropertiesDescriptor
+jalview.schemabinding.version2.Filter=jalview.schemabinding.version2.descriptors.FilterDescriptor
+jalview.schemabinding.version2.MappingChoice=jalview.schemabinding.version2.descriptors.MappingChoiceDescriptor
+jalview.schemabinding.version2.Alcodon=jalview.schemabinding.version2.descriptors.AlcodonDescriptor
+jalview.schemabinding.version2.UserColourScheme=jalview.schemabinding.version2.descriptors.UserColourSchemeDescriptor
jalview.schemabinding.version2.MapListTo=jalview.schemabinding.version2.descriptors.MapListToDescriptor
-jalview.schemabinding.version2.JalviewUserColours=jalview.schemabinding.version2.descriptors.JalviewUserColoursDescriptor
-jalview.schemabinding.version2.VamsasModel=jalview.schemabinding.version2.descriptors.VamsasModelDescriptor
-jalview.schemabinding.version2.PcaDataType=jalview.schemabinding.version2.descriptors.PcaDataTypeDescriptor
-jalview.schemabinding.version2.Pdbentry=jalview.schemabinding.version2.descriptors.PdbentryDescriptor
-jalview.schemabinding.version2.HiddenColumns=jalview.schemabinding.version2.descriptors.HiddenColumnsDescriptor
-jalview.schemabinding.version2.EigenMatrixE=jalview.schemabinding.version2.descriptors.EigenMatrixEDescriptor
-jalview.schemabinding.version2.Features=jalview.schemabinding.version2.descriptors.FeaturesDescriptor
-jalview.schemabinding.version2.EigenMatrixD=jalview.schemabinding.version2.descriptors.EigenMatrixDDescriptor
-jalview.schemabinding.version2.PairwiseMatrix=jalview.schemabinding.version2.descriptors.PairwiseMatrixDescriptor
-jalview.schemabinding.version2.VAMSAS=jalview.schemabinding.version2.descriptors.VAMSASDescriptor
-jalview.schemabinding.version2.DoubleVector=jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor
-jalview.schemabinding.version2.FeatureMatcher=jalview.schemabinding.version2.descriptors.FeatureMatcherDescriptor
+jalview.schemabinding.version2.SequenceType=jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor
+jalview.schemabinding.version2.AnnotationElement=jalview.schemabinding.version2.descriptors.AnnotationElementDescriptor
+jalview.schemabinding.version2.SeqPointMax=jalview.schemabinding.version2.descriptors.SeqPointMaxDescriptor
import org.exolab.castor.xml.Unmarshaller;
/**
- * Class EigenMatrixD.
+ * Class D.
*
* @version $Revision$ $Date$
*/
-public class EigenMatrixD extends DoubleVector
- implements java.io.Serializable
+public class D extends DoubleVector implements java.io.Serializable
{
// ----------------/
// - Constructors -/
// ----------------/
- public EigenMatrixD()
+ public D()
{
super();
}
org.exolab.castor.xml.ValidationException
{
return (jalview.schemabinding.version2.DoubleVector) Unmarshaller
- .unmarshal(jalview.schemabinding.version2.EigenMatrixD.class,
- reader);
+ .unmarshal(jalview.schemabinding.version2.D.class, reader);
}
/**
*/
private java.util.Vector _rowList;
+ /**
+ * Field _d.
+ */
+ private jalview.schemabinding.version2.D _d;
+
+ /**
+ * Field _e.
+ */
+ private jalview.schemabinding.version2.E _e;
+
// ----------------/
// - Constructors -/
// ----------------/
}
/**
+ * Returns the value of field 'd'.
+ *
+ * @return the value of field 'D'.
+ */
+ public jalview.schemabinding.version2.D getD()
+ {
+ return this._d;
+ }
+
+ /**
+ * Returns the value of field 'e'.
+ *
+ * @return the value of field 'E'.
+ */
+ public jalview.schemabinding.version2.E getE()
+ {
+ return this._e;
+ }
+
+ /**
* Method getRow.
*
* @param index
}
/**
+ * Sets the value of field 'd'.
+ *
+ * @param d
+ * the value of field 'd'.
+ */
+ public void setD(final jalview.schemabinding.version2.D d)
+ {
+ this._d = d;
+ }
+
+ /**
+ * Sets the value of field 'e'.
+ *
+ * @param e
+ * the value of field 'e'.
+ */
+ public void setE(final jalview.schemabinding.version2.E e)
+ {
+ this._e = e;
+ }
+
+ /**
*
*
* @param index
// --------------------------/
/**
- * Field _dList.
+ * Field _vList.
*/
- private java.util.Vector _dList;
+ private java.util.Vector _vList;
// ----------------/
// - Constructors -/
public DoubleVector()
{
super();
- this._dList = new java.util.Vector();
+ this._vList = new java.util.Vector();
}
// -----------/
/**
*
*
- * @param vD
+ * @param vV
* @throws java.lang.IndexOutOfBoundsException
* if the index given is outside the bounds of the collection
*/
- public void addD(final double vD)
+ public void addV(final double vV)
throws java.lang.IndexOutOfBoundsException
{
- this._dList.addElement(new java.lang.Double(vD));
+ this._vList.addElement(new java.lang.Double(vV));
}
/**
*
*
* @param index
- * @param vD
+ * @param vV
* @throws java.lang.IndexOutOfBoundsException
* if the index given is outside the bounds of the collection
*/
- public void addD(final int index, final double vD)
+ public void addV(final int index, final double vV)
throws java.lang.IndexOutOfBoundsException
{
- this._dList.add(index, new java.lang.Double(vD));
+ this._vList.add(index, new java.lang.Double(vV));
}
/**
- * Method enumerateD.
+ * Method enumerateV.
*
* @return an Enumeration over all double elements
*/
- public java.util.Enumeration enumerateD()
+ public java.util.Enumeration enumerateV()
{
- return this._dList.elements();
+ return this._vList.elements();
}
/**
- * Method getD.
+ * Method getV.
*
* @param index
* @throws java.lang.IndexOutOfBoundsException
* if the index given is outside the bounds of the collection
* @return the value of the double at the given index
*/
- public double getD(final int index)
+ public double getV(final int index)
throws java.lang.IndexOutOfBoundsException
{
// check bounds for index
- if (index < 0 || index >= this._dList.size())
+ if (index < 0 || index >= this._vList.size())
{
- throw new IndexOutOfBoundsException("getD: Index value '" + index
- + "' not in range [0.." + (this._dList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException("getV: Index value '" + index
+ + "' not in range [0.." + (this._vList.size() - 1) + "]");
}
- return ((java.lang.Double) _dList.get(index)).doubleValue();
+ return ((java.lang.Double) _vList.get(index)).doubleValue();
}
/**
- * Method getD.Returns the contents of the collection in an Array.
+ * Method getV.Returns the contents of the collection in an Array.
*
* @return this collection as an Array
*/
- public double[] getD()
+ public double[] getV()
{
- int size = this._dList.size();
+ int size = this._vList.size();
double[] array = new double[size];
- java.util.Iterator iter = _dList.iterator();
+ java.util.Iterator iter = _vList.iterator();
for (int index = 0; index < size; index++)
{
array[index] = ((java.lang.Double) iter.next()).doubleValue();
}
/**
- * Method getDCount.
+ * Method getVCount.
*
* @return the size of this collection
*/
- public int getDCount()
+ public int getVCount()
{
- return this._dList.size();
+ return this._vList.size();
}
/**
/**
*/
- public void removeAllD()
+ public void removeAllV()
{
- this._dList.clear();
+ this._vList.clear();
}
/**
- * Method removeD.
+ * Method removeV.
*
- * @param vD
+ * @param vV
* @return true if the object was removed from the collection.
*/
- public boolean removeD(final double vD)
+ public boolean removeV(final double vV)
{
- boolean removed = _dList.remove(new java.lang.Double(vD));
+ boolean removed = _vList.remove(new java.lang.Double(vV));
return removed;
}
/**
- * Method removeDAt.
+ * Method removeVAt.
*
* @param index
* @return the element removed from the collection
*/
- public double removeDAt(final int index)
+ public double removeVAt(final int index)
{
- java.lang.Object obj = this._dList.remove(index);
+ java.lang.Object obj = this._vList.remove(index);
return ((java.lang.Double) obj).doubleValue();
}
*
*
* @param index
- * @param vD
+ * @param vV
* @throws java.lang.IndexOutOfBoundsException
* if the index given is outside the bounds of the collection
*/
- public void setD(final int index, final double vD)
+ public void setV(final int index, final double vV)
throws java.lang.IndexOutOfBoundsException
{
// check bounds for index
- if (index < 0 || index >= this._dList.size())
+ if (index < 0 || index >= this._vList.size())
{
- throw new IndexOutOfBoundsException("setD: Index value '" + index
- + "' not in range [0.." + (this._dList.size() - 1) + "]");
+ throw new IndexOutOfBoundsException("setV: Index value '" + index
+ + "' not in range [0.." + (this._vList.size() - 1) + "]");
}
- this._dList.set(index, new java.lang.Double(vD));
+ this._vList.set(index, new java.lang.Double(vV));
}
/**
*
*
- * @param vDArray
+ * @param vVArray
*/
- public void setD(final double[] vDArray)
+ public void setV(final double[] vVArray)
{
// -- copy array
- _dList.clear();
+ _vList.clear();
- for (int i = 0; i < vDArray.length; i++)
+ for (int i = 0; i < vVArray.length; i++)
{
- this._dList.add(new java.lang.Double(vDArray[i]));
+ this._vList.add(new java.lang.Double(vVArray[i]));
}
}
import org.exolab.castor.xml.Unmarshaller;
/**
- * Class TridiagonalD.
+ * Class E.
*
* @version $Revision$ $Date$
*/
-public class TridiagonalD extends DoubleVector
- implements java.io.Serializable
+public class E extends DoubleVector implements java.io.Serializable
{
// ----------------/
// - Constructors -/
// ----------------/
- public TridiagonalD()
+ public E()
{
super();
}
org.exolab.castor.xml.ValidationException
{
return (jalview.schemabinding.version2.DoubleVector) Unmarshaller
- .unmarshal(jalview.schemabinding.version2.TridiagonalD.class,
- reader);
+ .unmarshal(jalview.schemabinding.version2.E.class, reader);
}
/**
private jalview.schemabinding.version2.TridiagonalMatrix _tridiagonalMatrix;
/**
- * Field _tridiagonalD.
- */
- private jalview.schemabinding.version2.TridiagonalD _tridiagonalD;
-
- /**
- * Field _tridiagonalE.
- */
- private jalview.schemabinding.version2.TridiagonalE _tridiagonalE;
-
- /**
* Field _eigenMatrix.
*/
private jalview.schemabinding.version2.EigenMatrix _eigenMatrix;
- /**
- * Field _eigenMatrixD.
- */
- private jalview.schemabinding.version2.EigenMatrixD _eigenMatrixD;
-
// ----------------/
// - Constructors -/
// ----------------/
}
/**
- * Returns the value of field 'eigenMatrixD'.
- *
- * @return the value of field 'EigenMatrixD'.
- */
- public jalview.schemabinding.version2.EigenMatrixD getEigenMatrixD()
- {
- return this._eigenMatrixD;
- }
-
- /**
* Returns the value of field 'pairwiseMatrix'.
*
* @return the value of field 'PairwiseMatrix'.
}
/**
- * Returns the value of field 'tridiagonalD'.
- *
- * @return the value of field 'TridiagonalD'.
- */
- public jalview.schemabinding.version2.TridiagonalD getTridiagonalD()
- {
- return this._tridiagonalD;
- }
-
- /**
- * Returns the value of field 'tridiagonalE'.
- *
- * @return the value of field 'TridiagonalE'.
- */
- public jalview.schemabinding.version2.TridiagonalE getTridiagonalE()
- {
- return this._tridiagonalE;
- }
-
- /**
* Returns the value of field 'tridiagonalMatrix'.
*
* @return the value of field 'TridiagonalMatrix'.
}
/**
- * Sets the value of field 'eigenMatrixD'.
- *
- * @param eigenMatrixD
- * the value of field 'eigenMatrixD'.
- */
- public void setEigenMatrixD(
- final jalview.schemabinding.version2.EigenMatrixD eigenMatrixD)
- {
- this._eigenMatrixD = eigenMatrixD;
- }
-
- /**
* Sets the value of field 'pairwiseMatrix'.
*
* @param pairwiseMatrix
}
/**
- * Sets the value of field 'tridiagonalD'.
- *
- * @param tridiagonalD
- * the value of field 'tridiagonalD'.
- */
- public void setTridiagonalD(
- final jalview.schemabinding.version2.TridiagonalD tridiagonalD)
- {
- this._tridiagonalD = tridiagonalD;
- }
-
- /**
- * Sets the value of field 'tridiagonalE'.
- *
- * @param tridiagonalE
- * the value of field 'tridiagonalE'.
- */
- public void setTridiagonalE(
- final jalview.schemabinding.version2.TridiagonalE tridiagonalE)
- {
- this._tridiagonalE = tridiagonalE;
- }
-
- /**
* Sets the value of field 'tridiagonalMatrix'.
*
* @param tridiagonalMatrix
+++ /dev/null
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class TridiagonalE.
- *
- * @version $Revision$ $Date$
- */
-public class TridiagonalE extends DoubleVector
- implements java.io.Serializable
-{
-
- // ----------------/
- // - Constructors -/
- // ----------------/
-
- public TridiagonalE()
- {
- super();
- }
-
- // -----------/
- // - Methods -/
- // -----------/
-
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid()
- {
- try
- {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex)
- {
- return false;
- }
- return true;
- }
-
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void marshal(final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, out);
- }
-
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException
- * if an IOException occurs during marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- */
- public void marshal(final org.xml.sax.ContentHandler handler)
- throws java.io.IOException,
- org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, handler);
- }
-
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @return the unmarshaled jalview.schemabinding.version2.DoubleVector
- */
- public static jalview.schemabinding.version2.DoubleVector unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- return (jalview.schemabinding.version2.DoubleVector) Unmarshaller
- .unmarshal(jalview.schemabinding.version2.TridiagonalE.class,
- reader);
- }
-
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void validate() throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- }
-
-}
//- Imported classes and packages -/
//---------------------------------/
-import jalview.schemabinding.version2.TridiagonalD;
+import jalview.schemabinding.version2.D;
/**
- * Class TridiagonalDDescriptor.
+ * Class DDescriptor.
*
* @version $Revision$ $Date$
*/
-public class TridiagonalDDescriptor extends
+public class DDescriptor extends
jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor
{
// - Constructors -/
// ----------------/
- public TridiagonalDDescriptor()
+ public DDescriptor()
{
super();
setExtendsWithoutFlatten(
new jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor());
_nsURI = "www.jalview.org";
- _xmlName = "tridiagonalD";
+ _xmlName = "D";
_elementDefinition = true;
}
*/
public java.lang.Class getJavaClass()
{
- return jalview.schemabinding.version2.TridiagonalD.class;
+ return jalview.schemabinding.version2.D.class;
}
/**
{ // -- local scope
}
desc.setValidator(fieldValidator);
+ // -- _d
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+ jalview.schemabinding.version2.D.class, "_d", "D",
+ org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler()
+ {
+ public java.lang.Object getValue(java.lang.Object object)
+ throws IllegalStateException
+ {
+ DoubleMatrix target = (DoubleMatrix) object;
+ return target.getD();
+ }
+
+ public void setValue(java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try
+ {
+ DoubleMatrix target = (DoubleMatrix) object;
+ target.setD((jalview.schemabinding.version2.D) value);
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public java.lang.Object newInstance(java.lang.Object parent)
+ {
+ return new jalview.schemabinding.version2.D();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.jalview.org");
+ desc.setMultivalued(false);
+ addFieldDescriptor(desc);
+
+ // -- validation code for: _d
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ { // -- local scope
+ }
+ desc.setValidator(fieldValidator);
+ // -- _e
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
+ jalview.schemabinding.version2.E.class, "_e", "E",
+ org.exolab.castor.xml.NodeType.Element);
+ handler = new org.exolab.castor.xml.XMLFieldHandler()
+ {
+ public java.lang.Object getValue(java.lang.Object object)
+ throws IllegalStateException
+ {
+ DoubleMatrix target = (DoubleMatrix) object;
+ return target.getE();
+ }
+
+ public void setValue(java.lang.Object object, java.lang.Object value)
+ throws IllegalStateException, IllegalArgumentException
+ {
+ try
+ {
+ DoubleMatrix target = (DoubleMatrix) object;
+ target.setE((jalview.schemabinding.version2.E) value);
+ } catch (java.lang.Exception ex)
+ {
+ throw new IllegalStateException(ex.toString());
+ }
+ }
+
+ public java.lang.Object newInstance(java.lang.Object parent)
+ {
+ return new jalview.schemabinding.version2.E();
+ }
+ };
+ desc.setHandler(handler);
+ desc.setNameSpaceURI("www.jalview.org");
+ desc.setMultivalued(false);
+ addFieldDescriptor(desc);
+
+ // -- validation code for: _e
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();
+ { // -- local scope
+ }
+ desc.setValidator(fieldValidator);
}
// -----------/
// -- initialize element descriptors
- // -- _dList
+ // -- _vList
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- java.lang.Double.TYPE, "_dList", "d",
+ java.lang.Double.TYPE, "_vList", "v",
org.exolab.castor.xml.NodeType.Element);
handler = new org.exolab.castor.xml.XMLFieldHandler()
{
throws IllegalStateException
{
DoubleVector target = (DoubleVector) object;
- return target.getD();
+ return target.getV();
}
public void setValue(java.lang.Object object, java.lang.Object value)
return;
}
- target.addD(((java.lang.Double) value).doubleValue());
+ target.addV(((java.lang.Double) value).doubleValue());
} catch (java.lang.Exception ex)
{
throw new IllegalStateException(ex.toString());
try
{
DoubleVector target = (DoubleVector) object;
- target.removeAllD();
+ target.removeAllV();
} catch (java.lang.Exception ex)
{
throw new IllegalStateException(ex.toString());
desc.setMultivalued(true);
addFieldDescriptor(desc);
- // -- validation code for: _dList
+ // -- validation code for: _vList
fieldValidator = new org.exolab.castor.xml.FieldValidator();
fieldValidator.setMinOccurs(0);
{ // -- local scope
//- Imported classes and packages -/
//---------------------------------/
-import jalview.schemabinding.version2.TridiagonalE;
+import jalview.schemabinding.version2.E;
/**
- * Class TridiagonalEDescriptor.
+ * Class EDescriptor.
*
* @version $Revision$ $Date$
*/
-public class TridiagonalEDescriptor extends
+public class EDescriptor extends
jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor
{
// - Constructors -/
// ----------------/
- public TridiagonalEDescriptor()
+ public EDescriptor()
{
super();
setExtendsWithoutFlatten(
new jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor());
_nsURI = "www.jalview.org";
- _xmlName = "tridiagonalE";
+ _xmlName = "E";
_elementDefinition = true;
}
*/
public java.lang.Class getJavaClass()
{
- return jalview.schemabinding.version2.TridiagonalE.class;
+ return jalview.schemabinding.version2.E.class;
}
/**
+++ /dev/null
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2.descriptors;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import jalview.schemabinding.version2.EigenMatrixD;
-
-/**
- * Class EigenMatrixDDescriptor.
- *
- * @version $Revision$ $Date$
- */
-public class EigenMatrixDDescriptor extends
- jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor
-{
-
- // --------------------------/
- // - Class/Member Variables -/
- // --------------------------/
-
- /**
- * Field _elementDefinition.
- */
- private boolean _elementDefinition;
-
- /**
- * Field _nsPrefix.
- */
- private java.lang.String _nsPrefix;
-
- /**
- * Field _nsURI.
- */
- private java.lang.String _nsURI;
-
- /**
- * Field _xmlName.
- */
- private java.lang.String _xmlName;
-
- // ----------------/
- // - Constructors -/
- // ----------------/
-
- public EigenMatrixDDescriptor()
- {
- super();
- setExtendsWithoutFlatten(
- new jalview.schemabinding.version2.descriptors.DoubleVectorDescriptor());
- _nsURI = "www.jalview.org";
- _xmlName = "eigenMatrixD";
- _elementDefinition = true;
- }
-
- // -----------/
- // - Methods -/
- // -----------/
-
- /**
- * Method getAccessMode.
- *
- * @return the access mode specified for this class.
- */
- public org.exolab.castor.mapping.AccessMode getAccessMode()
- {
- return null;
- }
-
- /**
- * Method getIdentity.
- *
- * @return the identity field, null if this class has no identity.
- */
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()
- {
- return super.getIdentity();
- }
-
- /**
- * Method getJavaClass.
- *
- * @return the Java class represented by this descriptor.
- */
- public java.lang.Class getJavaClass()
- {
- return jalview.schemabinding.version2.EigenMatrixD.class;
- }
-
- /**
- * Method getNameSpacePrefix.
- *
- * @return the namespace prefix to use when marshaling as XML.
- */
- public java.lang.String getNameSpacePrefix()
- {
- return _nsPrefix;
- }
-
- /**
- * Method getNameSpaceURI.
- *
- * @return the namespace URI used when marshaling and unmarshaling as XML.
- */
- public java.lang.String getNameSpaceURI()
- {
- return _nsURI;
- }
-
- /**
- * Method getValidator.
- *
- * @return a specific validator for the class described by this
- * ClassDescriptor.
- */
- public org.exolab.castor.xml.TypeValidator getValidator()
- {
- return this;
- }
-
- /**
- * Method getXMLName.
- *
- * @return the XML Name for the Class being described.
- */
- public java.lang.String getXMLName()
- {
- return _xmlName;
- }
-
- /**
- * Method isElementDefinition.
- *
- * @return true if XML schema definition of this Class is that of a global
- * element or element with anonymous type definition.
- */
- public boolean isElementDefinition()
- {
- return _elementDefinition;
- }
-
-}
{ // -- local scope
}
desc.setValidator(fieldValidator);
- // -- _tridiagonalD
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- jalview.schemabinding.version2.TridiagonalD.class,
- "_tridiagonalD", "tridiagonalD",
- org.exolab.castor.xml.NodeType.Element);
- handler = new org.exolab.castor.xml.XMLFieldHandler()
- {
- public java.lang.Object getValue(java.lang.Object object)
- throws IllegalStateException
- {
- PcaDataType target = (PcaDataType) object;
- return target.getTridiagonalD();
- }
-
- public void setValue(java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try
- {
- PcaDataType target = (PcaDataType) object;
- target.setTridiagonalD(
- (jalview.schemabinding.version2.TridiagonalD) value);
- } catch (java.lang.Exception ex)
- {
- throw new IllegalStateException(ex.toString());
- }
- }
-
- public java.lang.Object newInstance(java.lang.Object parent)
- {
- return new jalview.schemabinding.version2.TridiagonalD();
- }
- };
- desc.setHandler(handler);
- desc.setNameSpaceURI("www.jalview.org");
- desc.setRequired(true);
- desc.setMultivalued(false);
- addFieldDescriptor(desc);
-
- // -- validation code for: _tridiagonalD
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- fieldValidator.setMinOccurs(1);
- { // -- local scope
- }
- desc.setValidator(fieldValidator);
- // -- _tridiagonalE
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- jalview.schemabinding.version2.TridiagonalE.class,
- "_tridiagonalE", "tridiagonalE",
- org.exolab.castor.xml.NodeType.Element);
- handler = new org.exolab.castor.xml.XMLFieldHandler()
- {
- public java.lang.Object getValue(java.lang.Object object)
- throws IllegalStateException
- {
- PcaDataType target = (PcaDataType) object;
- return target.getTridiagonalE();
- }
-
- public void setValue(java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try
- {
- PcaDataType target = (PcaDataType) object;
- target.setTridiagonalE(
- (jalview.schemabinding.version2.TridiagonalE) value);
- } catch (java.lang.Exception ex)
- {
- throw new IllegalStateException(ex.toString());
- }
- }
-
- public java.lang.Object newInstance(java.lang.Object parent)
- {
- return new jalview.schemabinding.version2.TridiagonalE();
- }
- };
- desc.setHandler(handler);
- desc.setNameSpaceURI("www.jalview.org");
- desc.setRequired(true);
- desc.setMultivalued(false);
- addFieldDescriptor(desc);
-
- // -- validation code for: _tridiagonalE
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- fieldValidator.setMinOccurs(1);
- { // -- local scope
- }
- desc.setValidator(fieldValidator);
// -- _eigenMatrix
desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
jalview.schemabinding.version2.EigenMatrix.class,
{ // -- local scope
}
desc.setValidator(fieldValidator);
- // -- _eigenMatrixD
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
- jalview.schemabinding.version2.EigenMatrixD.class,
- "_eigenMatrixD", "eigenMatrixD",
- org.exolab.castor.xml.NodeType.Element);
- handler = new org.exolab.castor.xml.XMLFieldHandler()
- {
- public java.lang.Object getValue(java.lang.Object object)
- throws IllegalStateException
- {
- PcaDataType target = (PcaDataType) object;
- return target.getEigenMatrixD();
- }
-
- public void setValue(java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try
- {
- PcaDataType target = (PcaDataType) object;
- target.setEigenMatrixD(
- (jalview.schemabinding.version2.EigenMatrixD) value);
- } catch (java.lang.Exception ex)
- {
- throw new IllegalStateException(ex.toString());
- }
- }
-
- public java.lang.Object newInstance(java.lang.Object parent)
- {
- return new jalview.schemabinding.version2.EigenMatrixD();
- }
- };
- desc.setHandler(handler);
- desc.setNameSpaceURI("www.jalview.org");
- desc.setRequired(true);
- desc.setMultivalued(false);
- addFieldDescriptor(desc);
-
- // -- validation code for: _eigenMatrixD
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- fieldValidator.setMinOccurs(1);
- { // -- local scope
- }
- desc.setValidator(fieldValidator);
}
// -----------/
git://source.jalview.org / jalview.git / commitdiff