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JAL-629 Add --renderer arg/subval for vector output and fixed annotation renderer...
[jalview.git]
/
src
/
jalview
/
gui
/
2021-12-02
Jim Procter
JAL-3904 simple method to make an alignPanel the curren...
tree
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commitdiff
2021-11-08
Jim Procter
JAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFil...
tree
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commitdiff
2021-11-08
Jim Procter
JAL-3921 wait around until session file has been written
tree
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commitdiff
2021-11-05
Jim Procter
JAL-3829 remove duplicate IDs in 3DBeacons generated...
tree
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commitdiff
2021-11-05
Jim Procter
JAL-3829 format and tidy up unused code
tree
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commitdiff
2021-11-05
Jim Procter
JAL-3919 use model format field to ensure we get the...
tree
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commitdiff
2021-11-05
Jim Procter
JAL-3875 fully reset filter combo-box when fetch 3d...
tree
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commitdiff
2021-11-03
Jim Procter
JAL-3916 TODO for improved selection of covering structures
tree
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commitdiff
2021-11-03
Jim Procter
JAL-3915 remove RNAview opts from preferences. Still...
tree
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commitdiff
2021-11-02
Jim Procter
JAL-3875 test case and patch to verify the query 3d...
tree
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commitdiff
2021-10-18
Jim Procter
JAL-3904 override buildActionMenu to add in additional...
tree
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commitdiff
2021-10-18
Jim Procter
JAL-3904 failing test
tree
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commitdiff
2021-10-01
gmungoc
JAL-3725 restrict mapped virtual feature location to...
tree
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commitdiff
2021-10-01
Jim Procter
JAL-3616 show name of structure viewer in ‘new view...
tree
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commitdiff
2021-10-01
Jim Procter
JAL-3616 explicit configure external viewer config
tree
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commitdiff
2021-10-01
Jim Procter
JAL-3829 fetch 3D beacons now started by clicking butto...
tree
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commitdiff
2021-10-01
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
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commitdiff
2021-09-30
gmungoc
JAL-3371 more fine-grained slider; set Param slider...
tree
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commitdiff
2021-09-29
Ben Soares
JAL-3885 Made the database JComboBox have StringPair...
tree
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commitdiff
2021-09-29
Jim Procter
JAL-3829 report when 3d-beacons doesn’t provide any...
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 open web page for 3d beacons structure by...
features/r2_11_2/JAL-3829_3dbeacons
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 right click to view popup menu to show link...
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 abstract essential TDB metadata from the user...
tree
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commitdiff
2021-09-21
Ben Soares
JAL-3691 automatic insertion of Locale.ROOT to toUpperC...
tree
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commitdiff
2021-09-21
Jim Procter
Merge branch 'doc/JAL-3746_Release_2_11_2' into develop
tree
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commitdiff
2021-09-21
Jim Procter
JAL-3829 - callback finessing - leave DBRefFetcher...
tree
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commitdiff
2021-09-21
Jim Procter
JAL-3829 prefix PDBe filters with PDBe to make clear...
tree
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commitdiff
2021-09-21
Jim Procter
JAL-3829 alternative UX: need to select 3d-beacons...
tree
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commitdiff
2021-09-20
Jim Procter
JAL-3829 tests need to wait for dialog to be closed...
tree
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commitdiff
2021-09-20
Jim Procter
JAL-3829 TDBeacons fetcher needs a sequence with at...
tree
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commitdiff
2021-09-20
Jim Procter
JAL-3829 do better at detecting structure type, prompt...
tree
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commitdiff
2021-09-17
Jim Procter
JAL-3829 belt and braces check to make sure there is...
tree
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commitdiff
2021-09-16
Ben Soares
JAL-3774 combined changes from bug/JAL-3774_splitFrameF...
tree
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commitdiff
2021-09-16
Jim Procter
Merge branch 'develop' into doc/JAL-3746_Release_2_11_2
tree
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commitdiff
2021-09-16
Ben Soares
JAL-3739 (combined) commits from feature/JAL-3739_useFo...
tree
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commitdiff
2021-09-15
Jim Procter
JAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick
tree
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commitdiff
2021-09-15
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
tree
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commitdiff
2021-09-15
Jim Procter
JAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
tree
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commitdiff
2021-09-14
Ben Soares
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2021-09-14
Ben Soares
JAL-3521 Change grouped Jalview windows on linux taskba...
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3855 JAL-3829 better checks on PDB or mmCIF file...
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3829 JAL-3855 moved routing for retrieving structur...
tree
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commitdiff
2021-09-14
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3829 avoid sending rubbish to PDBe search api
tree
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commitdiff
2021-09-14
Jim Procter
JAL-3829 some providers don’t provide model quality...
tree
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commitdiff
2021-09-14
Ben Soares
JAL-2422 More helpful highlighting/user guidance of...
tree
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commitdiff
2021-09-13
Jim Procter
JAL-3829 select single best TDB structure and select...
tree
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commitdiff
2021-09-10
Jim Procter
JAL-3829 provide both PDBe queries and 3D-Beacons queri...
tree
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commitdiff
2021-09-10
Jim Procter
JAL-3829 insert title for structures from PDBe
tree
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commitdiff
2021-09-10
Jim Procter
JAL-3829 update for v1.0 3d-beacons api spec
tree
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commitdiff
2021-09-08
Jim Procter
JAL-3829 refactor and JAL-3391 JAL-2935 first stab...
tree
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commitdiff
2021-09-08
Jim Procter
JAL-3829 allow client-side selection of structures...
tree
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commitdiff
2021-09-06
Jim Procter
JAL-3829 work in progress - look up additional metadata...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 comments on the 3D structure chooser’s initial...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3865 isolate PDB and TDB clients and last query...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 JAL-3865 StructureChooserQuerySource implement...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the Struct...
tree
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commitdiff
2021-09-02
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3...
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 JAL-1842 minor tidying of code
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 better placement of call to notifyFeaturesChan...
tree
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commitdiff
2021-09-02
gmungoc
JAL-3509 coerce RESNUM to hidden (really) after fetchin...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 generalised Alphafold retrieval mechanism...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 Structure chooser specific FTS interface and...
tree
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commitdiff
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 3d-beacons structure chooser logic (not yet...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 3d-beacons has a custom alignment retrieval...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 pushed the PDBFTSClient specific code to new...
tree
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commitdiff
2021-08-13
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
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commitdiff
2021-08-11
Jim Procter
Merge branch 'features/JAL-2349_matrixvis' into feature...
tree
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commitdiff
2021-07-27
Jim Procter
JAL-3855 check if an alpha fold ID and retrieve using...
tree
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commitdiff
2021-04-06
Jim Procter
JAL-3832 dummy 3d-beacons database client and code...
tree
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commitdiff
2021-03-19
Ben Soares
JAL-3503 Added a Startup tab in Preferences, with gui...
tree
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commitdiff
2021-02-18
gmungoc
JAL-3822 pass panel height and width to wrapped geometr...
tree
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commitdiff
2021-02-18
gmungoc
JAL-2422 remove temporary patch (requires ChimeraX...
tree
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commitdiff
2021-02-10
Ben Soares
JAL-3251 On linux set (sun.awt.X11.XToolkit.)awtAppClas...
tree
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commitdiff
2021-02-10
Ben Soares
JAL-3521 Change grouped Jalview windows on linux taskba...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3814 don’t automatically launch the news browser...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3813 NOIDENTIFIERSSERVICE preference disables jalvi...
tree
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commitdiff
2021-02-05
Jim Procter
JAL-3811 document SHOW_JWS2_SERVICES user preference...
tree
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commitdiff
2021-02-04
gmungoc
JAL-2422 a fix and a fudge for two failing ChimeraX...
tree
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commitdiff
2021-01-21
gmungoc
JAL-3038 corrected code that reads editable JComboBox...
tree
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commitdiff
2020-12-17
gmungoc
JAL-1713 close and replace auto-opened Overview with...
tree
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commitdiff
2020-12-13
gmungoc
JAL-1713 renamed method to OverviewPanel.get/setFrameBo...
tree
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commitdiff
2020-12-12
gmungoc
JAL-1713 JAL-3119 JAL-3785 refactored get/set Overview...
tree
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commitdiff
2020-12-11
gmungoc
JAL-3785 set full title on automatically opened Overvie...
tree
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commitdiff
2020-12-11
Ben Soares
JAL-3594 Defintely want SplashScreen to appear in the...
tree
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commitdiff
2020-12-11
Ben Soares
JAL-3594 Adjustments to allow JalviewJS to use ChannelP...
tree
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commitdiff
2020-12-11
gmungoc
JAL-1713 fix typo; overview in project with open overvi...
tree
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commitdiff
2020-12-10
gmungoc
JAL-3784 null the right overview reference when it...
tree
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commitdiff
2020-12-10
gmungoc
JAL-3119 include view name (if any) in Overview title
tree
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commitdiff
2020-12-10
gmungoc
JAL-1713 refactorings to allow save/restore Overview...
tree
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commitdiff
2020-12-09
Ben Soares
JAL-3594 Images for splash screen
tree
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commitdiff
2020-12-09
Ben Soares
JAL-3594 JAL-3728 Added taskbar icons to desktop and...
tree
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commitdiff
2020-12-08
Ben Soares
Merge branch 'merge/develop_and_rebase_squashed_merge_J...
tree
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commitdiff
2020-12-08
Ben Soares
JAL-3594 Change main window title
tree
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commitdiff
2020-12-04
Ben Soares
JAL-3594 Added rotating logo png
tree
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commitdiff
2020-12-04
Ben Soares
JAL-3594 New jalview.util.ChannelProperties to get...
tree
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commitdiff
2020-12-01
Ben Soares
JAL-3609 JAL-3775 Tests for jalview.bin.HiDPISetting
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3775 Eclipse re-formatting commit
tree
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commitdiff
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