refactored Alignframe padGaps code to Alignment and Added AlignmentI method.
[jalview.git] / src / jalview / gui /
2006-01-11 jprocterrefactored Alignframe padGaps code to Alignment and...
2005-12-22 amwaterhouseCheck for null StringBuffer in getPDB
2005-12-22 amwaterhouseCheck for null StringBuffer in getPDB
2005-12-22 amwaterhouseWrapped search scrolls to visible result
2005-12-22 amwaterhouseRemove import
2005-12-22 amwaterhouseAnnotations.Graph can be bargraph, linegraph
2005-12-22 amwaterhouseRemove printPoints
2005-12-12 amwaterhouseChange dataset name
2005-12-12 amwaterhouseFont size label
2005-12-12 amwaterhouseFOnt size -3 for labels
2005-12-12 amwaterhouseFont changes on export png/eps
2005-12-12 amwaterhouseGetmask is slightly wider
2005-12-09 jprocterfixed pdbentry creation and multiple uniprot or pdb...
2005-12-09 amwaterhouseCan be used by PDBViewer
2005-12-08 jproctercontext dependent title for when called from desktop...
2005-12-08 amwaterhouseIf dataset seq exists for paste to existing alignment...
2005-12-08 jprocteradded some error checking and instruction dialogs
2005-12-08 amwaterhouseDont repaint if component has been removed
2005-12-08 amwaterhouseshowAnnotation state loaded
2005-12-08 amwaterhousenull pointer in wrapped mode, click near sequence
2005-12-07 amwaterhouseLicense added to new files
2005-12-06 amwaterhouseSlightly larger
2005-12-06 amwaterhouseAllow for DNA alignments in imgMap
2005-12-06 amwaterhouseMake ImageMap for features as well as groups
2005-12-06 amwaterhouseAdd features to dataset
2005-12-06 amwaterhouseAdd internalFrameActivated listener
2005-12-06 amwaterhouseAfter merge
2005-11-18 jprocterFixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...
2005-10-07 amwaterhousegetalignment method added
2005-10-07 amwaterhouseSelect all cutandpaste
2005-10-03 amwaterhouseRemove float width
2005-10-03 amwaterhouseRequest focus for new frames
2005-10-03 amwaterhouseReturn if no searchString
2005-10-03 amwaterhouseKeylistener added to internalFrame
2005-10-03 amwaterhouseRemove development code
2005-09-30 amwaterhouseRemove redundancy in Eclipse
2005-09-29 amwaterhouseTake into account scroll value
2005-09-27 amwaterhouseShow labels in wrapped view
2005-09-23 amwaterhouseDraw labels, anti alias
2005-09-23 amwaterhouseRight click copy/paste popup
2005-09-23 amwaterhouseNow an InternalFrame with menus
2005-09-22 amwaterhouseSetAnnotationVisible - ignore if wrapped
2005-09-22 amwaterhouseDont calculate conservation for nucleotides
2005-09-22 amwaterhouseCreate instance of FormatAdapter
2005-09-22 amwaterhouseDisplay nucleotides
2005-09-22 amwaterhouseBreak if regex not found
2005-09-22 amwaterhouseIf Mac user hasnt selected file format, give warning
2005-09-22 amwaterhouseWrap alignment with annotations
2005-09-21 amwaterhouseJalview
2005-09-21 amwaterhouseSequences must be aligned before PCA
2005-09-21 amwaterhouseNext active Frame losing focus bug fixed
2005-09-20 amwaterhouseChecks end of sequence before drawing text
2005-09-20 amwaterhousePCAPanel just requires viewport
2005-09-20 amwaterhouseHelp gets bounds from help map file
2005-09-20 amwaterhouseNew methods in treePanel
2005-09-20 amwaterhouseNull pointer if user presses shift before anything...
2005-09-20 amwaterhouseAlign labels format left
2005-09-20 amwaterhouseOptimise graphics copy object
2005-09-20 amwaterhouseUse selectionGroup to find chosen sequences
2005-09-20 amwaterhouseMake sure fontmetrics is not null
2005-09-19 amwaterhouseMake sure fontmetrics exists for headless state
2005-09-19 amwaterhouseDont add ServiceListeners if desktop is null
2005-09-19 amwaterhouseAlignment of node labels modified
2005-09-19 amwaterhouseShowDistances, placeHolders and bootstraps have their...
2005-09-16 amwaterhouseCheck image is not null in fast paint
2005-09-16 amwaterhouseSet distanceMenu selected true
2005-09-15 amwaterhouseOptionPane warning for out of memory
2005-09-15 amwaterhouseremove system.out
2005-09-15 amwaterhouseRemove key listener
2005-09-14 amwaterhouseMove bootStrap/distance settings outside thread
2005-09-14 amwaterhouseAdd end of consensus test for wrapped edit
2005-09-14 amwaterhouseMake new frame selected
2005-09-14 amwaterhouseCopy and paste uses FASTA format
2005-09-14 amwaterhouseCall methods in treeCanvas on init
2005-09-14 amwaterhouseoffy changes
2005-09-14 amwaterhouseOutOfMemory try catch
2005-09-14 amwaterhouseUse font size, not font height
2005-09-14 amwaterhouseUse getTreeFont instead of getFont
2005-09-14 amwaterhouseuse fontchooser to change fonts
2005-09-14 amwaterhouseCenter labels
2005-09-14 amwaterhouseSave fonts for trees
2005-09-14 amwaterhouseChange fonts in Treepanel
2005-09-14 amwaterhouseAdd header
2005-09-14 amwaterhouseSystem.gc after outofmemory
2005-09-14 amwaterhousePCA is in outofmemory try-catch
2005-09-13 amwaterhouseDont respond to mouse movements if alignment wrapped
2005-09-13 amwaterhouseGive focus to textarea on startup
2005-09-13 amwaterhouseEPSOptions added
2005-09-13 amwaterhouseWarn if out of memory
2005-09-12 amwaterhouseRemove gaps in regions, not char by char
2005-09-12 amwaterhousenull pointers removed
2005-09-12 amwaterhouseNull pointers removed
2005-09-12 amwaterhouseDont fastpaint if movement is zero
2005-09-12 amwaterhouseUpdate overview after change
2005-09-12 amwaterhouseUpdate overview in alignmentChanged
2005-09-12 amwaterhouseSize checking in drawGraph
2005-09-12 amwaterhouseOverview subsamples alignment
2005-09-08 amwaterhouseMove tree property change to treePanel
2005-09-08 amwaterhouseOnly 1 NJtree
2005-09-08 amwaterhouseInit PCA in thread
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