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JAL-2629 HMMs dropped on the alignment now map to the rf annotation
[jalview.git] / src / jalview / gui /
2017-08-28 tzvanaaltenJAL-2629 add option to set HMM Logo letter height to... tree | commitdiff
2017-08-28 TZVanaaltenJAL-2629 fix HMMER validation fail due to checking... tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 add multiple options for running hmmbuild... tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 add adjustable parameters to hmmbuild tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 adjust log parameter slightly and reduce granu... tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 adjust parameter min and max to better suit... tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 hmmsearch/build/align no longer run after... tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 add ability to add and select a DB for hmmsearch tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 remove sequence and group HMMER options tree | commitdiff
2017-08-25 TZVanaaltenJAL-2629 add basic parameter adjustment to hmmsearch... tree | commitdiff
2017-08-23 tzvanaaltenJAL-2629 selected HMM is now a sequence, not a HMM tree | commitdiff
2017-08-23 tzvanaaltenJAL-2629 add logarithmic parameter for logarithmic... tree | commitdiff
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer tree | commitdiff
2017-08-17 TZVanaaltenJAL-2629 add documentation to previous work tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-16 TZVanaaltenJAL-2629 add hmmbuild validation check which also gets... tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 add checks for executing hmmer commands as... tree | commitdiff
2017-08-15 tzvanaaltenJAL-2629 fix file loading issues on Mac tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 add HMMER version check tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 selected HMM name now shown in HMMER menu tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 the HMMER tab is now disabled when HMMER is... tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 remove redundant options from HMMER menu tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 add validation for HMMER path tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 hmmalign can now be run from the sequence... tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 add HMMER tab in preferences menu tree | commitdiff
2017-08-11 TZVanaaltenJAL-2629 add ability to select HMMs tree | commitdiff
2017-08-11 TZVanaaltenJAL-2599 HMMs can now be dropped onto the desktop tree | commitdiff
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame tree | commitdiff
2017-08-10 gmungocJAL-2660 used saved value of ignoreGapsInConsensus... tree | commitdiff
2017-08-10 tzvanaaltenJAL-2629 fix files permission issue on Mac tree | commitdiff
2017-08-09 TZVanaaltenJAL-2599 fix for issue where info annot would not display tree | commitdiff
2017-08-09 tzvanaaltenJAL-2599 fix for issue where info annot would not display tree | commitdiff
2017-08-09 TZVanaaltenJAL-2629 removed unnecessary exception throws from... tree | commitdiff
2017-08-09 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... tree | commitdiff
2017-08-08 TZVanaaltenJAL-2629 add ability to select hmmer binaries folder tree | commitdiff
2017-08-08 gmungocJAL-2650 configure new viewport settings before selecti... tree | commitdiff
2017-08-07 TZVanaaltenJAL-2629 current hmmer commands are now executed in... tree | commitdiff
2017-08-07 Jim ProcterMerge branch 'bug/JAL-2592userDefinedScheme' into develop tree | commitdiff
2017-08-04 TZVanaaltenJAL-2599 fixed information annotation buttons not working tree | commitdiff
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment tree | commitdiff
2017-08-03 gmungocJAL-2435 test for 'mirror font' option visible (not... tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons tree | commitdiff
2017-08-01 Jim ProcterMerge branch 'bug/JAL-2632' into develop tree | commitdiff
2017-08-01 gmungocMerge branch 'feature/JAL-2611' into develop tree | commitdiff
2017-08-01 gmungocMerge branch 'bug/JAL-2630gradColourUpdateOverview... tree | commitdiff
2017-07-31 TZVanaaltenJAL-2629 add hmmalign command tree | commitdiff
2017-07-31 gmungocJAL-2622 don't vertical scroll wrapped alignment id... tree | commitdiff
2017-07-28 kiramtJAL-2632 Added paintAlignment(true) to show cols code tree | commitdiff
2017-07-28 gmungocJAL-147 corrected status bar message for wrapped scroll... tree | commitdiff
2017-07-28 gmungocJAL-2622 no vertical scroll of wrapped alignment from... tree | commitdiff
2017-07-28 gmungocJAL-2006 squash rounding errors at min/max threshold... tree | commitdiff
2017-07-28 gmungocJAL-2630 update Overview/structure from graduated colou... tree | commitdiff
2017-07-27 TZVanaaltenJAL-2629 implement hmmbuild tree | commitdiff
2017-07-27 TZVanaaltenJAL-2629 moved HMM storage location to placeholder... tree | commitdiff
2017-07-25 TZVanaaltenJAL-2629 add non-functional HMMER menu tree | commitdiff
2017-07-24 tzvanaaltenJAL-2616 add placeholder sequence for HMM, does not... tree | commitdiff
2017-07-22 gmungocJAL-2623 initialise colour threshold slider correctly tree | commitdiff
2017-07-22 kiramtMerge branch 'develop' into feature/JAL-2611 tree | commitdiff
2017-07-20 TZVanaaltenJAL-2616 remove statistical analysis from AlignFrame tree | commitdiff
2017-07-20 TZVanaaltenJAL-2599 add ability to process RNA HMMer files tree | commitdiff
2017-07-18 gmungocJAL-147 don't scroll up beyond startRes = 0 bug/JAL-147scrollWrappedView tree | commitdiff
2017-07-18 gmungocJAL-147 corrected calculation of vertical scroll positi... tree | commitdiff
2017-07-18 gmungocJAL-147 draw up to last position of wrapped alignment! tree | commitdiff
2017-07-18 kiramtJAL-2611 Better tree | commitdiff
2017-07-17 kiramtJAL-2611 Still not happy with behaviour tree | commitdiff
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics tree | commitdiff
2017-07-14 kiramtJAL-2611 First pass, not thrilled with hidden column... tree | commitdiff
2017-07-14 kiramtJAL-2611 Pre-merge checkin tree | commitdiff
2017-07-12 TZVanaaltentest HMM annotaTION tree | commitdiff
2017-07-11 TZVanaaltencomplete Information Content annotation tree | commitdiff
2017-07-06 gmungocJAL-2605 ensure correct scale width calculation tree | commitdiff
2017-07-04 gmungocJAL-147 remove redundant calls to update overview panel tree | commitdiff
2017-07-04 gmungocJAL-2608 tidy up OverviewPanel when closed tree | commitdiff
2017-07-04 gmungocJAL-147 call method that sets visible width when drawin... tree | commitdiff
2017-07-03 gmungocMerge branch 'develop' into bug/JAL-147scrollWrappedView tree | commitdiff
2017-07-03 gmungocJAL-147 correct width out-by-one drawing ids tree | commitdiff
2017-07-03 gmungocJAL-147 ViewportRanges calculate wrapped vertical scrol... tree | commitdiff
2017-07-03 gmungocJAL-147 don't draw ScalePanel when in wrapped mode tree | commitdiff
2017-07-03 gmungocJAL-2034 don't refresh Overview for selection in id... tree | commitdiff
2017-06-30 gmungocJAL-147 don't page up above origin, repaint ids for... tree | commitdiff
2017-06-30 gmungocJAL-2602 pulled up identical methods to base class tree | commitdiff
2017-06-29 gmungocJAL-147 improved wrapped scrolling (including Overview... tree | commitdiff
2017-06-29 TZVanaaltentransferred the storage position of the HMM to annotations tree | commitdiff
2017-06-29 gmungocJAL-2605 exclude left/right scale in sequence column... tree | commitdiff
2017-06-28 gmungocMerge branch 'bug/JAL-2600resizeflicker' into develop tree | commitdiff
2017-06-28 kiramtJAL-2600 Tidies bug/JAL-2600resizeflicker tree | commitdiff
2017-06-28 kiramtJAL-2600 updates following review tree | commitdiff
2017-06-27 kiramtJAL-2600 Tidies tree | commitdiff
2017-06-27 kiramtJAL-2600 Abandoned fastpaint for resize; now full repai... tree | commitdiff
2017-06-27 gmungocJAL-2602 check for null or empty description when copyi... tree | commitdiff
2017-06-27 kiramtJAL-2600 Add in IdCanvas and checks for 0 size images tree | commitdiff
2017-06-27 kiramtJAL-2600 vertical fast paint too tree | commitdiff
2017-06-27 kiramtJAL-2600 fast painting on resize tree | commitdiff
2017-06-26 kiramtJAL-2600 reinstate original behaviour tree | commitdiff
2017-06-23 TZVanaaltenadd HMMER colour scheme tree | commitdiff
2017-06-22 TZVanaaltenfully integrate HMMER3 file format into Jalview tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... tree | commitdiff
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591 tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2589gapColour' into develop tree | commitdiff
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