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JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
[jalview.git]
/
src
/
jalview
/
gui
/
2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
tree
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commitdiff
2019-02-26
gmungoc
JAL-3201 group colour schemes distinct instances
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 don't recalculate group conservation for Id...
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without dupli...
tree
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commitdiff
2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2019-01-15
Jim Procter
JAL-1767 refactor associated view logic to public metho...
tree
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commitdiff
2019-01-14
gmungoc
JAL-3186 remove Variable Colour from popup menu
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 wider dialog so all fields show!
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
tree
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commitdiff
2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
tree
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commitdiff
2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
tree
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commitdiff
2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
tree
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commitdiff
2018-09-06
Jim Procter
JAL-2854 compute visible annotation panel height and...
tree
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commitdiff
2018-08-31
Jim Procter
JAL-3095 account for sequence start when highlighting...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'releases/Release_2_10_5_Branch' of source...
tree
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commitdiff
2018-08-31
Jim Procter
java doc and fix for JAL-3095 - region of trimmed RNA...
tree
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commitdiff
2018-08-31
gmungoc
JAL-3003 remove redundant call to drawSelectionGroup
tree
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commitdiff
2018-08-28
gmungoc
JAL-3059 use correct border colour for groups
tree
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commitdiff
2018-08-28
gmungoc
JAL-3003 draw selection group outline on main graphics...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 comment to clarify wrapped print algorithm
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 print/export wrapped uses common code to draw...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3087 include full alignment height in repeating...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 draw/print sequence ids now uses common code...
tree
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commitdiff
2018-08-15
gmungoc
JAL-3080 remove tree partition if no groups created
feature/JAL-3080clearTreeGroups
tree
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commitdiff
2018-08-14
gmungoc
JAL-3078 reset Tree font (only!) on Cancel
bug/JAL-3078cancelTreeFont
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 news reader thread should be in background...
bugs/JAL-3009_blockingNetworkThreads
tree
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commitdiff
2018-06-05
Jim Procter
JAL-3009 Identifiers.Org retrieval on background thread.
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 don't capture or report min-max for mixed...
tree
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commitdiff
2018-05-31
gmungoc
JAL-2808 pre-fill numeric inequality filter with min...
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'bug/JAL-797' into develop
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2992panelHeight' into releases...
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-1460_dragndropWindows' into relea...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2992 simpler heuristic for available height
bug/JAL-2992panelHeight
tree
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commitdiff
2018-05-25
Jim Procter
Merge branch 'bug/JAL-2991_exporttosvgwrapview' into...
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 temp variable for clearer conditional and...
bug/JAL-1460_dragndropWindows
tree
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commitdiff
2018-05-25
Jim Procter
JAL-1460 javadoc
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 tidied up the use of windows link file parser
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 more complete drag'n'drop debugging info and...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 process .lnk files dragged to Jalview when...
tree
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commitdiff
2018-05-24
Jim Procter
JAL-1460 new data flavor for URLs added belt-and-braces...
tree
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commitdiff
2018-05-23
gmungoc
JAL-2993 AlignFrame listen for keystrokes in OverviewPanel
tree
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commitdiff
2018-05-23
Jim Procter
fix for JAL-2991 - we could do better :/
bug/JAL-2991_exporttosvgwrapview
tree
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commitdiff
2018-05-21
gmungoc
JAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW
bug/JAL-797
tree
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commitdiff
2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 unit test for save and restore PCA
features/JAL-1767pcaInProject
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 scheme DoubleMatrix type includes D and E...
tree
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commitdiff
2018-05-07
gmungoc
JAL-2982 use configured background colour in PCA image...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...
tree
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commitdiff
2018-05-07
gmungoc
JAL-1767 save PCA D and E vectors instead of 'details...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2975 Shift-arrow keys to rotate PCA incrementally
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 schema and Castor changes for Save PCA in...
tree
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commitdiff
2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
tree
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commitdiff
2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
tree
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commitdiff
2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
tree
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commitdiff
2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
tree
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commitdiff
2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
tree
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commitdiff
2018-04-27
gmungoc
JAL-2964 tree@linkToAllViews attribute added to project...
tree
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commitdiff
2018-04-27
gmungoc
JAL-2963 correctly dim PCA points with negative z-coord...
tree
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commitdiff
2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 rename run method (as not a Runnable)
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 remove Change Parameters menu from PCA panel
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 option to offer BLOSUM62 for nucleotide PCA
tree
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commitdiff
2018-04-26
gmungoc
JAL-2962 code tidying/documentation (non-functional...
tree
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commitdiff
2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
tree
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commitdiff
2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-04-12
gmungoc
JAL-1847 minor post-review updates
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
tree
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commitdiff
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