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JAL-2668 add tests for HMMER commands, annotation and io
[jalview.git] / src / jalview / gui /
2017-08-17 TZVanaaltenJAL-2629 add documentation to previous work tree | commitdiff
2017-08-16 TZVanaaltenJAL-2629 add hmmbuild validation check which also gets... tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 add checks for executing hmmer commands as... tree | commitdiff
2017-08-15 tzvanaaltenJAL-2629 fix file loading issues on Mac tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 add HMMER version check tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 selected HMM name now shown in HMMER menu tree | commitdiff
2017-08-15 TZVanaaltenJAL-2629 the HMMER tab is now disabled when HMMER is... tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 remove redundant options from HMMER menu tree | commitdiff
2017-08-14 TZVanaaltenJAL-2629 add validation for HMMER path tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 hmmalign can now be run from the sequence... tree | commitdiff
2017-08-13 TZVanaaltenJAL-2629 add HMMER tab in preferences menu tree | commitdiff
2017-08-11 TZVanaaltenJAL-2629 add ability to select HMMs tree | commitdiff
2017-08-11 TZVanaaltenJAL-2599 HMMs can now be dropped onto the desktop tree | commitdiff
2017-08-10 TZVanaaltenJAL-2629 hmmalign now correctly creates a new frame tree | commitdiff
2017-08-10 tzvanaaltenJAL-2629 fix files permission issue on Mac tree | commitdiff
2017-08-09 TZVanaaltenJAL-2599 fix for issue where info annot would not display tree | commitdiff
2017-08-09 tzvanaaltenJAL-2599 fix for issue where info annot would not display tree | commitdiff
2017-08-09 TZVanaaltenJAL-2629 removed unnecessary exception throws from... tree | commitdiff
2017-08-08 TZVanaaltenJAL-2629 add ability to select hmmer binaries folder tree | commitdiff
2017-08-07 TZVanaaltenJAL-2629 current hmmer commands are now executed in... tree | commitdiff
2017-08-04 TZVanaaltenJAL-2599 fixed information annotation buttons not working tree | commitdiff
2017-08-04 TZVanaaltenJAL-2629 multiple HMMs can now be dropped onto an alignment tree | commitdiff
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons tree | commitdiff
2017-07-31 TZVanaaltenJAL-2629 add hmmalign command tree | commitdiff
2017-07-27 TZVanaaltenJAL-2629 implement hmmbuild tree | commitdiff
2017-07-27 TZVanaaltenJAL-2629 moved HMM storage location to placeholder... tree | commitdiff
2017-07-25 TZVanaaltenJAL-2629 add non-functional HMMER menu tree | commitdiff
2017-07-24 tzvanaaltenJAL-2616 add placeholder sequence for HMM, does not... tree | commitdiff
2017-07-20 TZVanaaltenJAL-2616 remove statistical analysis from AlignFrame tree | commitdiff
2017-07-20 TZVanaaltenJAL-2599 add ability to process RNA HMMer files tree | commitdiff
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics tree | commitdiff
2017-07-12 TZVanaaltentest HMM annotaTION tree | commitdiff
2017-07-11 TZVanaaltencomplete Information Content annotation tree | commitdiff
2017-06-29 TZVanaaltentransferred the storage position of the HMM to annotations tree | commitdiff
2017-06-23 TZVanaaltenadd HMMER colour scheme tree | commitdiff
2017-06-22 TZVanaaltenfully integrate HMMER3 file format into Jalview tree | commitdiff
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop tree | commitdiff
2017-05-31 gmungocJAL-2547 handle contact features 'around' a gap correctly tree | commitdiff
2017-05-30 kiramtJAL-2573 Fixes for alignment < viewport width, and... JAL-2571 tree | commitdiff
2017-05-30 gmungocJAL-2547 tooltip/AmendFeatures on gap straddled by... tree | commitdiff
2017-05-30 kiramtJAL-2571 Corrected alignment width/height checks to... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structu... tree | commitdiff
2017-05-29 Jim ProcterMerge branch 'bug/JAL-2536' into develop tree | commitdiff
2017-05-29 Jim ProcterJAL-2536 tweak javadoc wording tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop tree | commitdiff
2017-05-27 Jim ProcterMerge branch 'bug/JAL-2547tooltipOnGap' into develop tree | commitdiff
2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus... tree | commitdiff
2017-05-25 kiramtJAL-2034 don't update overview after click without... tree | commitdiff
2017-05-24 kiramtJAL-2551 Fix to group colouring when group extent is... bug/JAL-2551 tree | commitdiff
2017-05-23 gmungocJAL-2547 don't show features in tooltip over a gap bug/JAL-2547tooltipOnGap tree | commitdiff
2017-05-22 gmungocJAL-2504 update the right feature colour when creating... bug/JAL-2510amendFeatures tree | commitdiff
2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition() tree | commitdiff
2017-05-17 Jim ProcterMerge branch 'bug/JAL-2510amendFeatures' into develop tree | commitdiff
2017-05-17 Jim ProcterMerge branch 'features/JAL-2447experimentalFlag' into... tree | commitdiff
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature... tree | commitdiff
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures tree | commitdiff
2017-05-16 kiramtJAL-2536 Overview window sizing not subject to min... bug/JAL-2536 tree | commitdiff
2017-05-16 kiramtMerge branch 'develop' into bug/JAL-2491 tree | commitdiff
2017-05-16 kiramtJAL-2491 Better merge tree | commitdiff
2017-05-15 gmungocJAL-2532 new feature types and colour changes from... tree | commitdiff
2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar... tree | commitdiff
2017-05-15 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-05-15 kiramtJAL-2491 Tidies tree | commitdiff
2017-05-12 kiramtJAL-2491 Tidies to Overview panel calls in light of... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... tree | commitdiff
2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and... tree | commitdiff
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-05-12 kiramtJAL-2491 Renamed comp scrolling flag for consistency... tree | commitdiff
2017-05-12 kiramtJAL-2491 Tweaks for applet tree | commitdiff
2017-05-11 kiramtJAL-2491 First port to applet tree | commitdiff
2017-05-11 kiramtJAL-2491 Unit tests and updates tree | commitdiff
2017-05-10 kiramtJAL-2491 Make it work with cursor movement tree | commitdiff
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling tree | commitdiff
2017-05-10 kiramtJAL-2491 Cursor scrolling tree | commitdiff
2017-05-09 kiramtJAL-2491 Tidies and more refactoring tree | commitdiff
2017-05-09 kiramtJAL-2491 Resolved highlighting and initialisation problems tree | commitdiff
2017-05-09 gmungocJAL-1632 correct i18n and NPE tree | commitdiff
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... tree | commitdiff
2017-05-08 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-08 gmungocJAL-1632 i18n for warning messages tree | commitdiff
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... tree | commitdiff
2017-05-08 kiramtJAL-2491 Started moving other scrolling fns into viewpo... tree | commitdiff
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... tree | commitdiff
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch tree | commitdiff
2017-05-05 kiramtJAL-2491 Scrolling and interaction with overview/find... tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges tree | commitdiff
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-05-05 kiramtJAL-2491 More working split panel + new scrolling tree | commitdiff
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... tree | commitdiff
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed tree | commitdiff
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
2017-05-04 tcofoegbuMerge branch 'develop' of https://source.jalview.org... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... tree | commitdiff
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... tree | commitdiff
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