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JAL-2629 can now choose number of jackhmmer iterations
[jalview.git] / src / jalview / gui /
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold... tree | commitdiff
2019-01-14 gmungocJAL-3125 tidy up tree | commitdiff
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value tree | commitdiff
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review tree | commitdiff
2019-01-08 gmungocJAL-3180 Disabled 'By Annotation' group colour menu... feature/JAL-3180colourAnnotationMenu tree | commitdiff
2019-01-04 gmungocJAL-3180 fix By Annotation selection state in colour... tree | commitdiff
2019-01-04 gmungocJAL-3181 refactor: extracted buildLinkMenu() for testab... feature/JAL-3181linkOrdering tree | commitdiff
2019-01-03 gmungocJAL-3181 order link menu items tree | commitdiff
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 tree | commitdiff
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 tree | commitdiff
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... tree | commitdiff
2018-12-19 gmungocJAL-2621 Overview uses hand cursor in drag box, crossha... bug/JAL-2621 tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into... tree | commitdiff
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... tree | commitdiff
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view tree | commitdiff
2018-12-14 Ben SoaresJAL-3130 single class testing on CLI with ant [ -Dclass... tree | commitdiff
2018-12-13 Ben SoaresJAL-3130 Attempting to fix 8 tests that pass on a Mac... tree | commitdiff
2018-12-11 Ben SoaresJAL-3130 Turns out Quit/About/Preferences handlers... tree | commitdiff
2018-12-06 Ben SoaresJAL-3130 incorporating feature/JAL-3063jaxbNoCastor... tree | commitdiff
2018-12-03 gmungocJAL-3063 Castor removed from codebase tree | commitdiff
2018-12-03 gmungocMerge branch 'feature/JAL-3063JAXB' into feature/JAL... tree | commitdiff
2018-12-03 Ben SoaresJAL-3130 Added flagged runtime 'Reflection' check on... tree | commitdiff
2018-11-30 gmungocJAL-2420 don't offer Reveal All over alignment panel bug/JAL-2420revealAllMenu tree | commitdiff
2018-11-30 gmungocJAL-3166 catch NPE if all sequences are hidden bug/JAL-3166npeAllRowsHidden tree | commitdiff
2018-11-28 gmungocJAL-3164 redraw complement overview on hide columns bug/JAL-3164complementOverview tree | commitdiff
2018-11-28 gmungocJAL-3158 additional calls to reset 'selection changed... bug/JAL-3158selectionBroadcasts tree | commitdiff
2018-11-22 gmungocJAL-3161 limit tooltip and status updates to visible... bug/JAL-3161annotationTooltipRange tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 drop redundant hidden representative sequences... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 JAL-2773 don’t need to call paintAlignment... tree | commitdiff
2018-11-19 Jim ProcterJAL-3127 tidier tree group colour -> view propagation tree | commitdiff
2018-11-19 gmungocJAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag tree | commitdiff
2018-11-09 Ben SoaresJAL-1988 This fixes the Quit response when user cancels... tree | commitdiff
2018-11-09 Jim ProcterJAL-3127 polished setColor after review tree | commitdiff
2018-11-08 Ben SoaresJAL-1988 JAL-3130 Now we're in Java 11 land, using... tree | commitdiff
2018-11-08 Ben SoaresJAL-1988 tidying, plus don't add Preferences to Tools... tree | commitdiff
2018-11-08 Ben SoaresJAL-1988 JAVA 11 enabled version with Quit, Preferences... tree | commitdiff
2018-11-05 Ben SoaresJAL-1988 Investigating... tree | commitdiff
2018-11-05 Ben SoaresJAL-3141 couple of minor fixes for example files being... tree | commitdiff
2018-11-02 Ben SoaresJAL-3141 Tests now available and working, bringing... tree | commitdiff
2018-11-01 Ben SoaresJAL-3141 Preferences 'Backups' tab now fits. Moved... tree | commitdiff
2018-10-31 Ben SoaresJAL-3141 Preferences 'Backups' tab now working. Doesn... tree | commitdiff
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 reinstate ability to set sequence ID colour... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup to create & propag... tree | commitdiff
2018-10-16 Jim ProcterJAL-3127 use AlignViewportI.addGroup() to add group... tree | commitdiff
2018-10-16 Jim Procterviewport flag to indicate when structure view needs... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 pass reference to AlignViewportI when creating... tree | commitdiff
2018-10-08 gmungocJAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg tree | commitdiff
2018-10-08 gmungocJAL-1244 editSequence extract method refactoring tree | commitdiff
2018-10-05 gmungocJAL-1244 improved status message for insert/delete gap tree | commitdiff
2018-10-04 gmungocJAL-3132 status message for sequence and/or graph group... tree | commitdiff
2018-10-04 gmungocJAL-1244 no status message (yet) for locked edit of... tree | commitdiff
2018-10-04 gmungocJAL-1244 status message for insert/delete gaps on singl... tree | commitdiff
2018-10-04 gmungocJAL-1244 status message while dragging a stretch group tree | commitdiff
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... tree | commitdiff
2018-10-04 gmungocJAL-3093 unit tests, no mouse action over left/right... tree | commitdiff
2018-10-03 gmungocJAL-3093 tweaks to code and test for 3px gap above... tree | commitdiff
2018-10-02 gmungocJAL-3093 unit tests for SeqPanel.findMousePosition tree | commitdiff
2018-10-02 gmungocJAL-3093 limited Consensus popup menu when in wrapped... tree | commitdiff
2018-10-02 gmungocJAL-3093 added MousePos.isOverAnnotation() for extra... tree | commitdiff
2018-10-01 gmungocJAL-3093 'read-only' annotations when in wrapped mode tree | commitdiff
2018-10-01 gmungocJAL-3093 refactor (+test) Annotation Labels tooltip... tree | commitdiff
2018-10-01 gmungocJAL-3093 show annotation tooltips and status message... tree | commitdiff
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB... tree | commitdiff
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... tree | commitdiff
2018-09-26 gmungocJAL-3125 tidy up tree | commitdiff
2018-09-26 gmungocJAL-3125 avoid slider 'rounding' threshold field value tree | commitdiff
2018-09-21 gmungocJAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour tree | commitdiff
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing... tree | commitdiff
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code... tree | commitdiff
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and... tree | commitdiff
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... tree | commitdiff
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 New View via JAXB tree | commitdiff
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... tree | commitdiff
2018-09-18 Jim ProcterJAL-3035 more dedasification tree | commitdiff
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-10 gmungocJAL-3099 use Alignment.getVisibleWidth() where wanted bug/JAL-3099alignmentVisibleWidth tree | commitdiff
2018-09-10 gmungocJAL-3097 adjust viewport width on hiding columns bug/JAL-3097blankExtraColumns tree | commitdiff
2018-09-10 gmungocJAL-3108 fix concurrency bug in Reveal action handler tree | commitdiff
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... tree | commitdiff
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... tree | commitdiff
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for... tree | commitdiff
2018-09-06 Jim ProcterJAL-3091 release notes for JAL-3104 tree | commitdiff
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and... tree | commitdiff
2018-08-31 Jim ProcterJAL-3095 account for sequence start when highlighting... tree | commitdiff
2018-08-31 Jim ProcterMerge branch 'releases/Release_2_10_5_Branch' of source... tree | commitdiff
2018-08-31 Jim Procterjava doc and fix for JAL-3095 - region of trimmed RNA... tree | commitdiff
2018-08-31 gmungocJAL-3003 remove redundant call to drawSelectionGroup tree | commitdiff
2018-08-28 gmungocJAL-3059 use correct border colour for groups tree | commitdiff
2018-08-28 gmungocJAL-3003 draw selection group outline on main graphics... tree | commitdiff
2018-08-28 gmungocJAL-247 comment to clarify wrapped print algorithm tree | commitdiff
2018-08-28 gmungocJAL-247 print/export wrapped uses common code to draw... tree | commitdiff
2018-08-28 gmungocJAL-3087 include full alignment height in repeating... tree | commitdiff
2018-08-28 gmungocJAL-247 draw/print sequence ids now uses common code... tree | commitdiff
2018-08-16 gmungocJAL-3082 handle regex error, exclusive threshold, unit... tree | commitdiff
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