JAL-3989 Code tidying, added JVL_HEADER for older versions of Jalview, allow time...
[jalview.git] / src / jalview / gui /
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d...
2022-03-31 Jim ProcterJAL-3985 formatting
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries...
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog...
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE...
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's...
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing
2022-03-08 Jim ProcterJAL-3746 apply copyright to source
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti...
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...
2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news...
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly...
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to...
2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and...
2022-02-15 Jim ProcterJAL-3906 use indicate to highlight current mousedOver...
2022-02-14 Jim ProcterJAL-3956 - PDBEntry objects constructed from 3D-Beacons...
2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu...
2022-02-11 Jim ProcterJAL-3931 fix - escape % symbols after urlencoding
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresMerge branch 'develop' into update/JAL-3949_abstracted_...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-02-07 Jim ProcterJAL-3186 remove ‘Variable Colour’ from the sequence...
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no...
2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into...
2022-01-26 gmungocJAL-3725 restrict mapped virtual feature location to...
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model...
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use...
2021-12-08 Jim ProcterJAL-3931 remove % and - from ids so Pymol doesn’t strip...
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characte...
2021-12-02 Jim ProcterJAL-3904 use new AlignPanel API method
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the curren...
2021-11-08 Jim ProcterJAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFil...
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written
2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated...
2021-11-05 Jim ProcterJAL-3829 format and tidy up unused code
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the...
2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d...
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still...
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d...
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional...
2021-10-18 Jim ProcterJAL-3904 failing test
2021-10-01 gmungocJAL-3725 restrict mapped virtual feature location to...
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view...
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking butto...
2021-10-01 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3...
2021-09-30 gmungocJAL-3371 more fine-grained slider; set Param slider...
2021-09-29 Ben SoaresJAL-3885 Made the database JComboBox have StringPair...
2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any...
2021-09-24 Jim ProcterJAL-3829 open web page for 3d beacons structure by... features/r2_11_2/JAL-3829_3dbeacons
2021-09-24 Jim ProcterJAL-3829 right click to view popup menu to show link...
2021-09-24 Jim ProcterJAL-3829 abstract essential TDB metadata from the user...
2021-09-21 Ben SoaresJAL-3691 automatic insertion of Locale.ROOT to toUpperC...
2021-09-21 Jim ProcterMerge branch 'doc/JAL-3746_Release_2_11_2' into develop
2021-09-21 Jim ProcterJAL-3829 - callback finessing - leave DBRefFetcher...
2021-09-21 Jim ProcterJAL-3829 prefix PDBe filters with PDBe to make clear...
2021-09-21 Jim ProcterJAL-3829 alternative UX: need to select 3d-beacons...
2021-09-20 Jim ProcterJAL-3829 tests need to wait for dialog to be closed...
2021-09-20 Jim ProcterJAL-3829 TDBeacons fetcher needs a sequence with at...
2021-09-20 Jim ProcterJAL-3829 do better at detecting structure type, prompt...
2021-09-17 Jim ProcterJAL-3829 belt and braces check to make sure there is...
2021-09-16 Ben SoaresJAL-3774 combined changes from bug/JAL-3774_splitFrameF...
2021-09-16 Jim ProcterMerge branch 'develop' into doc/JAL-3746_Release_2_11_2
2021-09-16 Ben SoaresJAL-3739 (combined) commits from feature/JAL-3739_useFo...
2021-09-15 Jim ProcterJAL-3746 fix bad merge from 2.11.1.4/5 branch cherrypick
2021-09-15 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
2021-09-15 Jim ProcterJAL-3638 JAL-3680 fix docs for Alt + Arrow LRUD in...
2021-09-14 Ben SoaresMerge branch 'develop' of https://source.jalview.org...
2021-09-14 Ben SoaresJAL-3521 Change grouped Jalview windows on linux taskba...
2021-09-14 Jim ProcterJAL-3855 JAL-3829 better checks on PDB or mmCIF file...
2021-09-14 Jim ProcterJAL-3829 JAL-3855 moved routing for retrieving structur...
2021-09-14 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3...
2021-09-14 Jim ProcterJAL-3829 avoid sending rubbish to PDBe search api
2021-09-14 Jim ProcterJAL-3829 some providers don’t provide model quality...
2021-09-14 Ben SoaresJAL-2422 More helpful highlighting/user guidance of...
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select...
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri...
2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec
2021-09-08 Jim ProcterJAL-3829 refactor and JAL-3391 JAL-2935 first stab...
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures...
2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata...
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial...
2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query...
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement...
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct...
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3...
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan...
next