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removeGaps method can record changes in alignment columns to pass to ColumnSelection
[jalview.git]
/
src
/
jalview
/
gui
/
2006-08-18
amwaterhouse
Check colourScheme is not null - jalview prior 2.5...
tree
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commitdiff
2006-08-18
amwaterhouse
Only discover DAS sources if panel shown
tree
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commitdiff
2006-08-18
amwaterhouse
only set new layout if 2 buttons visible
tree
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commitdiff
2006-08-17
amwaterhouse
H key updates
tree
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commitdiff
2006-08-17
amwaterhouse
If no annotation exists
tree
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commitdiff
2006-08-17
amwaterhouse
Hold onto selected region when hiding all columns only
tree
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commitdiff
2006-08-17
jprocter
moved visible sub-alignment extraction and update from...
tree
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commitdiff
2006-08-17
amwaterhouse
Monospace check
tree
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commitdiff
2006-08-17
amwaterhouse
1 more pixel allowed between chars and graph
tree
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commitdiff
2006-08-17
amwaterhouse
control and shift
tree
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commitdiff
2006-08-17
amwaterhouse
Dont set group null hideCOls
tree
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commitdiff
2006-08-17
amwaterhouse
OptionPanes invokeLater
tree
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commitdiff
2006-08-17
amwaterhouse
Control and alt for toggle hide
tree
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commitdiff
2006-08-16
amwaterhouse
Fire alignment changed if seqs hidden / revealed
tree
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commitdiff
2006-08-15
jprocter
make annotation label font size follow alignment font...
tree
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commitdiff
2006-08-15
jprocter
ensure that close widget is available for jobs that...
tree
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commitdiff
2006-08-15
amwaterhouse
Setselectiongroup null on hide
tree
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commitdiff
2006-08-15
amwaterhouse
H key to hide / reveal
tree
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commitdiff
2006-08-15
amwaterhouse
Select revealed seqs
tree
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commitdiff
2006-08-15
amwaterhouse
WRITEABLE_FORMATS and READABLE_FORMATS string []
tree
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commitdiff
2006-08-14
amwaterhouse
Stockholm parser added
tree
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commitdiff
2006-08-14
jprocter
function to indicate job has finished but no results...
tree
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commitdiff
2006-08-14
amwaterhouse
new feature added
tree
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commitdiff
2006-08-14
amwaterhouse
Stop loading must be before JOptionPane, 1.5 bug
tree
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commitdiff
2006-08-14
amwaterhouse
No need to check selection group size
tree
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commitdiff
2006-08-14
amwaterhouse
findingFeatures flag set
tree
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commitdiff
2006-08-13
jprocter
fixed end-residue bug and subjob panel names bug
tree
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commitdiff
2006-08-11
jprocter
multiple web service jobs from visible blocks of an...
tree
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commitdiff
2006-08-11
amwaterhouse
Update overview on conservation/pid slider mouseRelease
tree
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commitdiff
2006-08-10
amwaterhouse
Control and shift for col selection
tree
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commitdiff
2006-08-10
amwaterhouse
Only add 1 feature settings table
tree
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commitdiff
2006-08-10
amwaterhouse
Invert column selection
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commitdiff
2006-08-09
amwaterhouse
Must save all the feature settings
tree
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commitdiff
2006-08-09
amwaterhouse
Check if groups have already been added or not
tree
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commitdiff
2006-08-09
amwaterhouse
Fix for local sources with no capabilities
tree
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commitdiff
2006-08-09
amwaterhouse
Icon drawing updated
tree
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commitdiff
2006-08-09
amwaterhouse
Null hidden cols check
tree
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commitdiff
2006-08-09
amwaterhouse
Remove system.out
tree
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commitdiff
2006-08-09
amwaterhouse
Make sure link menu is displayed
tree
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commitdiff
2006-08-09
amwaterhouse
Save links and scores and keyValues for features
tree
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commitdiff
2006-08-08
amwaterhouse
Capitals
tree
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commitdiff
2006-08-07
amwaterhouse
Use idCanvas highlight system
tree
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commitdiff
2006-08-07
amwaterhouse
Set wrapped mode even if false
tree
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commitdiff
2006-08-04
jprocter
recover original data for tree and pca as alignment...
tree
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commitdiff
2006-07-28
amwaterhouse
Show reveal all menu
tree
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commitdiff
2006-07-28
amwaterhouse
findSeq in SeqPanel is used
tree
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commitdiff
2006-07-28
amwaterhouse
Resize image if id width changes
tree
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commitdiff
2006-07-28
amwaterhouse
No need for count
tree
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commitdiff
2006-07-28
amwaterhouse
Resize inactive when mouse exited and no dragEvent
tree
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commitdiff
2006-07-28
amwaterhouse
getIndex replaced with findSeq in seqPanel
tree
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commitdiff
2006-07-28
amwaterhouse
Remove system.out
tree
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commitdiff
2006-07-27
amwaterhouse
Send gapChar to print original Data
tree
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commitdiff
2006-07-27
amwaterhouse
Remove immediate call to repaint when deleting
tree
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commitdiff
2006-07-27
amwaterhouse
seq size cant be less than 2 for tree
tree
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commitdiff
2006-07-27
amwaterhouse
Remove unnecessary imports
tree
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commitdiff
2006-07-27
amwaterhouse
Reset das_registry_url if null or empty
tree
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commitdiff
2006-07-27
amwaterhouse
Dont set pdb file if it doenst exist
tree
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commitdiff
2006-07-27
amwaterhouse
Readline instead of bit by bit
tree
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commitdiff
2006-07-27
amwaterhouse
Cant have col less than 0
tree
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commitdiff
2006-07-26
amwaterhouse
Load and save PDB files
tree
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commitdiff
2006-07-26
jprocter
Ignore list created
tree
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commitdiff
2006-07-26
jprocter
Implemented CIGAR representation of an Alignment view...
tree
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commitdiff
2006-07-26
amwaterhouse
Switch to new srs url
tree
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commitdiff
2006-07-26
amwaterhouse
back to org.biojava
tree
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commitdiff
2006-07-26
amwaterhouse
Column hide/show updated
tree
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commitdiff
2006-07-25
amwaterhouse
ColumnSelection moved to datamodel
tree
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commitdiff
2006-07-25
amwaterhouse
activeRow is -1
tree
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commitdiff
2006-07-25
amwaterhouse
Odd edit bug with represented seqs fixed
tree
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commitdiff
2006-07-25
amwaterhouse
Moved to datamodel
tree
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commitdiff
2006-07-25
amwaterhouse
Output menus added
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commitdiff
2006-07-25
amwaterhouse
Repaint
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commitdiff
2006-07-25
amwaterhouse
Dont make new image unless resize
tree
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commitdiff
2006-07-25
amwaterhouse
Reorder popupmenu
tree
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commitdiff
2006-07-25
amwaterhouse
jalview.biojava
tree
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commitdiff
2006-07-25
amwaterhouse
x < endres-startres
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commitdiff
2006-07-25
amwaterhouse
x < endres-startres
tree
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commitdiff
2006-07-25
amwaterhouse
Add dbrefs to mouseover
tree
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commitdiff
2006-07-25
amwaterhouse
FileLoader replaces paste when Dropping files
tree
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commitdiff
2006-07-25
amwaterhouse
Associate pdb files
tree
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commitdiff
2006-07-25
amwaterhouse
pdb fetchDataAsFile
tree
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commitdiff
2006-07-21
amwaterhouse
correct icon draw bug
tree
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commitdiff
2006-07-21
amwaterhouse
Corrected hidden row feature render bug
tree
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commitdiff
2006-07-21
amwaterhouse
getViewAsString can ignore sequenceGroup
tree
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commitdiff
2006-07-21
amwaterhouse
show hide stuff moved from columnSelection
tree
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commitdiff
2006-07-21
amwaterhouse
Saves hidden seqs and DBRefs
tree
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commitdiff
2006-07-21
amwaterhouse
av.showHiddenMarkers check
tree
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commitdiff
2006-07-21
amwaterhouse
Show hide cols and rows
tree
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commitdiff
2006-07-19
amwaterhouse
Remove b keystroke
tree
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commitdiff
2006-07-19
amwaterhouse
Merge new frame buttons added
tree
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commitdiff
2006-07-19
amwaterhouse
Output to text window added
tree
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commitdiff
2006-07-19
amwaterhouse
Correct highlighted res height
tree
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commitdiff
2006-07-19
amwaterhouse
Save output use whole alignment
tree
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commitdiff
2006-07-19
amwaterhouse
Original tree data output in PFAM format
tree
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commitdiff
2006-07-19
amwaterhouse
Highlight hidden columns after revealing
tree
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commitdiff
2006-07-19
amwaterhouse
Check for all gapped seqs
tree
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commitdiff
2006-07-19
amwaterhouse
Copy works with selection area
tree
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commitdiff
2006-07-18
amwaterhouse
Use selection area with hidden columns in calculations
tree
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commitdiff
2006-07-17
amwaterhouse
Towards an auto dbref fetcher
tree
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commitdiff
2006-07-13
amwaterhouse
DAS feature retrieval updated
tree
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commitdiff
2006-07-12
amwaterhouse
sequences are private in SequenceGroup
tree
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commitdiff
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git://source.jalview.org / jalview.git / history