JAL-1632 add score model params to PCAModel and PCA constructors
[jalview.git] / src / jalview / gui /
2016-11-24 gmungocFileFormatI further tweaks, clean compile
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop
2016-11-22 tcofoegbuMerge branch 'bug/JAL-2277_refactorPrintUnwrapped'...
2016-11-22 gmungocJAL-2337 fix: only adjust once for scroll offset bug/JAL-2277_refactorPrintUnwrapped
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi...
2016-11-22 Jim ProcterJAL-1738 JAL-345 changed keystroke to ‘B’ (with modifie...
2016-11-22 gmungocJAL-2277 refactored AlignmentPanel.printUnwrapped to...
2016-11-21 tcofoegbuJAL-2277 bug fix for mis-alligned graphics output for...
2016-11-21 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-11-21 tcofoegbuJAL-2332 bugfix to enable structure chooser opening...
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview
2016-11-17 gmungocJAL-2327 disulfide bond abstracted to SequenceFeature...
2016-11-16 Jim ProcterMerge branch 'features/JAL-1723_sequenceReport' into...
2016-11-15 kiramtJAL-2316 Moved url providers into own package
2016-11-15 kiramtJAL-2316 Refactoring of functionality to provide urls...
2016-11-14 tcofoegbuJAL-2322 Refactored unified architecture for data ...
2016-11-14 kiramtUrl links changes - incomplete checkin as battery low
2016-11-11 tcofoegbuJAL-2277 Refactored out duplicated method - printUnwrap...
2016-11-10 tcofoegbuBugfix to enable accurate chain extraction/association...
2016-11-10 gmungocJAL-2320 added getViewer() method to return Chimera...
2016-11-07 gmungocJAL-2282 show url links that need checked; remove ...
2016-11-04 kiramtJAL-2315 Clear sequenceURLLinks if all sequence links...
2016-11-04 kiramtJAL-2282 Better check for existing url links
2016-11-04 kiramtJAL-2282 Message box stays on top at Jalview open;...
2016-11-04 gmungocJAL-966 JAL-1854 removed redundant methods / modifiers...
2016-11-03 kiramtJAL-2282 Link menu disabled if there are no valid links
2016-11-03 kiramtJAL-2282 If checkbox on warning dialog is unclicked...
2016-11-03 gmungocJAL-2310 don't double-count sequence matches; code...
2016-11-02 Jim ProcterJAL-345 JAL-1738 menu item, AlignFrame action listener...
2016-11-02 kiramtMerge remote-tracking branch 'origin/bug/JAL-2282'...
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold...
2016-11-02 kiramtJAL-2282 Renamed internal use of sequence id / db acces...
2016-11-01 tcofoegbuJAL-2280 refactored and improved structure file identif...
2016-11-01 kiramtJAL-2282 Refactor SequenceAnnotationReport to use refac...
2016-11-01 kiramtJAL-2282 Changed DB accession id token to $DB_ACCESSION...
2016-11-01 kiramtJAL-2282 Refactored URL link creation into UrlLink
2016-11-01 kiramtJAL-2282 Removed unexpected ; from code
2016-11-01 kiramtJAL-2282 Force double-clicking to use sequence_id cases...
2016-10-31 gmungocJAL-1723 ellipsis in tooltip if xrefs to more than...
2016-10-31 gmungocMerge branch 'develop' into features/JAL-1723_sequenceR...
2016-10-31 kiramtForce double-clicking to use sequence_id cases and...
2016-10-31 kiramtUse ACCESSION_ID for database accession id, and SEQUENC...
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp...
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults...
2016-10-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-10-27 tcofoegbuJAL-2280 Improvement to enable drag'n'drop association...
2016-10-27 gmungocJAL-2287 treat Escape like Cancel in dialog box
2016-10-26 gmungocJAL-2287 Cancel option on Close Chimera? dialog
2016-10-26 tcofoegbuJAL-2284 basic support for exporting BioJS MSA viewer... features/JAL-2284_export-biojsmsa-via-cli
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch'
2016-10-24 kiramtMerge branch 'develop' of https://source.jalview.org...
2016-10-24 gmungocJAL-2272 Cmd-drag to group edit sequences on Mac (Ctrl... bug/JAL-2272cmdClickGroupEdit
2016-10-24 kiramtCorrect Preferences to check for SEQUENCE_NAME as well...
2016-10-22 kiramtWorking links menu
2016-10-21 kiramtFactored URL Link constants out into UrlConstants file.
2016-10-17 kiramtacceptDrop call added before getTransferable in alignme... bug/JAL-1552dragndroptake2
2016-10-17 kiramtRe-attempt to fix JAL-1552 by removing extra calls...
2016-10-14 gmungocMerge branch 'releases/Release_2_10_Branch' into task... task/JAL-2196pdbeProperties
2016-10-13 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-13 gmungocJAL-2044 increase Jmol file load timeout from 5 to...
2016-10-13 gmungocJAL-2044 ensure AAStructureBindingModel.pdbEntry has...
2016-10-13 gmungocJAL-2044 include model name in progress bar message...
2016-10-11 tcofoegbuMerge branch 'features/JAL-2039_Offer_cached_structuref...
2016-10-11 tcofoegbuJAL-2039 improvement to offer cached structure view... features/JAL-2039_Offer_cached_structurefiles_immediately
2016-10-11 gmungocMerge branch 'releases/Release_2_10_Branch' into develop
2016-10-11 gmungocJAL-2241 check for null jprovider when processing New...
2016-10-11 kiramtJAL-1552 added acceptDrop call before getTransferable... bug/JAL-1552dragndropurl
2016-10-11 gmungocJAL-2233 reverted changes to Jmol logging levels
2016-10-06 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch...
2016-10-05 Jim ProcterJAL-2036 rebuild menus for each panel before adding...
2016-10-05 Jim ProcterJAL-2189 license header
2016-10-05 Jim ProcterJAL-2189 source formatting
2016-10-05 gmungocMerge branch 'develop' into task/JAL-2196pdbeProperties
2016-09-30 gmungocJAL-2236 code restored (and some compiler warnings...
2016-09-30 gmungocJAL-2236 fixes for desktop and applet implementation...
2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;...
2016-09-29 gmungocJAL-2237 apply default filter as sort in initial search
2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation...
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
2016-09-27 gmungocJAL-2231 save preferred scroll height _without_ progres...
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-09-22 gmungocJAL-2216 null currentAlignFrame on close all windows...
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation...
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore...
2016-09-19 gmungocJAL-2118 reorder annotations after add/delete/hide...
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-16 gmungocJAL-2183 avoid duplicate closeDialog()
2016-09-13 gmungocJAL-2196 refactor PDBEntry.getProperty,setProperty...
2016-09-13 tcofoegbuJAL-2195 bug fix to enable restoring jmol session save...
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157
2016-09-07 Jim ProcterJAL-2191 comments re chimera view code redundancy and...
2016-09-04 Jim ProcterJAL-1919 preserve filename on restore of project so...
2016-09-04 Jim ProcterJAL-1803 recover type field faithfully for mmCIF/PDB...
2016-09-04 Jim ProcterJAL-1803 restore property array for a sequence’s associ...
2016-09-01 Jim ProcterMerge branch 'bug/JAL-2034_fix' into develop
2016-09-01 Jim ProcterJAL-2034 - remember to reset needsOverviewUpdate at...
2016-09-01 gmungocJAL-2077 check isPopupTrigger in mouseReleased not...
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