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JAL-3111 JAL-3340 JAL-3184 JAL-3338 new known defects
[jalview.git]
/
src
/
jalview
/
gui
/
2019-01-14
gmungoc
JAL-2069 wider dialog so all fields show!
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
tree
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commitdiff
2019-01-08
gmungoc
JAL-3180 Disabled 'By Annotation' group colour menu...
feature/JAL-3180colourAnnotationMenu
tree
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commitdiff
2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 refactor: extracted buildLinkMenu() for testab...
feature/JAL-3181linkOrdering
tree
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commitdiff
2019-01-03
gmungoc
JAL-3181 order link menu items
tree
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commitdiff
2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
tree
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commitdiff
2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-19
gmungoc
JAL-2621 Overview uses hand cursor in drag box, crossha...
bug/JAL-2621
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
tree
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commitdiff
2018-12-14
Ben Soares
JAL-3130 single class testing on CLI with ant [ -Dclass...
tree
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commitdiff
2018-12-13
Ben Soares
JAL-3130 Attempting to fix 8 tests that pass on a Mac...
tree
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commitdiff
2018-12-11
Ben Soares
JAL-3130 Turns out Quit/About/Preferences handlers...
tree
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
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commitdiff
2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2018-12-03
Ben Soares
JAL-3130 Added flagged runtime 'Reflection' check on...
tree
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commitdiff
2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
bug/JAL-2420revealAllMenu
tree
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commitdiff
2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
bug/JAL-3166npeAllRowsHidden
tree
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commitdiff
2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
tree
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commitdiff
2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
bug/JAL-3158selectionBroadcasts
tree
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commitdiff
2018-11-22
gmungoc
JAL-3161 limit tooltip and status updates to visible...
bug/JAL-3161annotationTooltipRange
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 drop redundant hidden representative sequences...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 JAL-2773 don’t need to call paintAlignment...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 tidier tree group colour -> view propagation
tree
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commitdiff
2018-11-19
gmungoc
JAL-3154 disable drag to reorder JTable columns
bug/JAL-3154tableColumnDrag
tree
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commitdiff
2018-11-09
Ben Soares
JAL-1988 This fixes the Quit response when user cancels...
tree
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commitdiff
2018-11-09
Jim Procter
JAL-3127 polished setColor after review
tree
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commitdiff
2018-11-08
Ben Soares
JAL-1988 JAL-3130 Now we're in Java 11 land, using...
tree
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commitdiff
2018-11-08
Ben Soares
JAL-1988 tidying, plus don't add Preferences to Tools...
tree
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commitdiff
2018-11-08
Ben Soares
JAL-1988 JAVA 11 enabled version with Quit, Preferences...
tree
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commitdiff
2018-11-05
Ben Soares
JAL-1988 Investigating...
tree
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commitdiff
2018-11-05
Ben Soares
JAL-3141 couple of minor fixes for example files being...
tree
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commitdiff
2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
tree
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commitdiff
2018-11-01
Ben Soares
JAL-3141 Preferences 'Backups' tab now fits. Moved...
tree
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commitdiff
2018-10-31
Ben Soares
JAL-3141 Preferences 'Backups' tab now working. Doesn...
tree
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commitdiff
2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 reinstate ability to set sequence ID colour...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
tree
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commitdiff
2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 TODO - resolve reference to Viewport for group...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 comments, javadoc, method signature tweaks
feature/JAL-1244stretchStatusMsg
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 editSequence extract method refactoring
tree
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commitdiff
2018-10-05
gmungoc
JAL-1244 improved status message for insert/delete gap
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 status message for sequence and/or graph group...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 no status message (yet) for locked edit of...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message for insert/delete gaps on singl...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message while dragging a stretch group
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
tree
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commitdiff
2018-10-04
gmungoc
JAL-3093 unit tests, no mouse action over left/right...
tree
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commitdiff
2018-10-03
gmungoc
JAL-3093 tweaks to code and test for 3px gap above...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 unit tests for SeqPanel.findMousePosition
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 limited Consensus popup menu when in wrapped...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 added MousePos.isOverAnnotation() for extra...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 'read-only' annotations when in wrapped mode
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 refactor (+test) Annotation Labels tooltip...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 show annotation tooltips and status message...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 refactored Export Features to apply all visibi...
tree
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commitdiff
2018-09-26
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2018-09-26
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
bug/JAL-3120restoreFeatureColour
tree
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commitdiff
2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
tree
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commitdiff
2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
tree
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commitdiff
2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
tree
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commitdiff
2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 New View via JAXB
tree
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commitdiff
2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
tree
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commitdiff
2018-09-18
Jim Procter
JAL-3035 more dedasification
tree
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commitdiff
2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
tree
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commitdiff
2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
tree
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commitdiff
2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
bug/JAL-3099alignmentVisibleWidth
tree
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commitdiff
2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
bug/JAL-3097blankExtraColumns
tree
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commitdiff
2018-09-10
gmungoc
JAL-3108 fix concurrency bug in Reveal action handler
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
tree
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commitdiff
2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
tree
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commitdiff
2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
tree
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commitdiff
2018-09-06
Jim Procter
JAL-2854 compute visible annotation panel height and...
tree
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commitdiff
2018-08-31
Jim Procter
JAL-3095 account for sequence start when highlighting...
tree
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commitdiff
2018-08-31
Jim Procter
Merge branch 'releases/Release_2_10_5_Branch' of source...
tree
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commitdiff
2018-08-31
Jim Procter
java doc and fix for JAL-3095 - region of trimmed RNA...
tree
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commitdiff
2018-08-31
gmungoc
JAL-3003 remove redundant call to drawSelectionGroup
tree
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commitdiff
2018-08-28
gmungoc
JAL-3059 use correct border colour for groups
tree
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commitdiff
2018-08-28
gmungoc
JAL-3003 draw selection group outline on main graphics...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 comment to clarify wrapped print algorithm
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 print/export wrapped uses common code to draw...
tree
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commitdiff
2018-08-28
gmungoc
JAL-3087 include full alignment height in repeating...
tree
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commitdiff
2018-08-28
gmungoc
JAL-247 draw/print sequence ids now uses common code...
tree
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commitdiff
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