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JAL-3748 additional asserts to verify start/end after reconstructing sequence from...
[jalview.git]
/
src
/
jalview
/
gui
/
2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
tree
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commitdiff
2019-02-27
gmungoc
JAL-2527 default Overview 'hide hidden' i.e. WYSIWYG
tree
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commitdiff
2019-02-26
gmungoc
JAL-3201 JAL-2386 don't pre-select 'apply to all groups'
tree
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commitdiff
2019-02-26
gmungoc
JAL-3201 group colour schemes distinct instances
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 don't recalculate group conservation for Id...
tree
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commitdiff
2019-02-24
gmungoc
JAL-3198 SequenceGroup 'bulk constructor' without dupli...
tree
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commitdiff
2019-02-22
gmungoc
JAL-2915 don't recalculate Overview on scroll to positi...
tree
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commitdiff
2019-02-21
gmungoc
JAL-3187 handle no mapping / complement features withou...
tree
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commitdiff
2019-02-19
gmungoc
JAL-3187 hacks to get peptide variant in to Jmol hover...
tree
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commitdiff
2019-02-18
gmungoc
JAL-3187 reset ViewStyle on Cancel in FeatureSettings
tree
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commitdiff
2019-02-18
gmungoc
JAL-3187 'on top' optional for complementary features
tree
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commitdiff
2019-02-15
gmungoc
JAL-3010 getColumnClass() never return null
tree
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commitdiff
2019-01-30
Ben Soares
JAL-3141 Enabled the 'Include backpup files' checkbox...
tree
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commitdiff
2019-01-25
Ben Soares
JAL-3141. This adds quite a lot of code to allow an...
tree
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commitdiff
2019-01-25
gmungoc
JAL-3187 set initial state of checkbox from viewport
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 New layout and wording of Backups Preferences...
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Reformatted code in eclipse
tree
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commitdiff
2019-01-23
Ben Soares
JAL-3141 Added Presets options in the Backups Preferenc...
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 also repaint complement on change in FeatureTy...
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 repaint a 'following' complementary view on...
tree
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commitdiff
2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on struct...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Fixed example filenames in Preferences pane...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Changed suffix position to after the extension...
tree
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commitdiff
2019-01-18
gmungoc
JAL-3187 basic first version for tooltips only (renderi...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into develop
tree
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commitdiff
2019-01-16
Jim Procter
Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA...
tree
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commitdiff
2019-01-15
Jim Procter
JAL-1767 refactor associated view logic to public metho...
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Forgot this file, sorry!
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Added a 'Save Project as...' File menu item...
tree
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commitdiff
2019-01-14
gmungoc
JAL-3186 remove Variable Colour from popup menu
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 wider dialog so all fields show!
tree
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commitdiff
2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 tidy up
tree
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commitdiff
2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
tree
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commitdiff
2019-01-08
gmungoc
JAL-3180 Disabled 'By Annotation' group colour menu...
feature/JAL-3180colourAnnotationMenu
tree
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commitdiff
2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
tree
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commitdiff
2019-01-04
gmungoc
JAL-3181 refactor: extracted buildLinkMenu() for testab...
feature/JAL-3181linkOrdering
tree
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commitdiff
2019-01-03
gmungoc
JAL-3181 order link menu items
tree
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commitdiff
2018-12-20
Jim Procter
JAL-1767 port save/load PCA panel to JAXB - JAL-3063
tree
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commitdiff
2018-12-20
Jim Procter
JAL-3171 JAL-3063 merge updates from JAL-1767
tree
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commitdiff
2018-12-19
Jim Procter
Merge branch 'features/JAL-1767pcaInProject' into bug...
tree
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commitdiff
2018-12-19
gmungoc
JAL-2621 Overview uses hand cursor in drag box, crossha...
bug/JAL-2621
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
tree
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commitdiff
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
tree
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commitdiff
2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
tree
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commitdiff
2018-12-14
Ben Soares
JAL-3130 single class testing on CLI with ant [ -Dclass...
tree
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commitdiff
2018-12-13
Ben Soares
JAL-3130 Attempting to fix 8 tests that pass on a Mac...
tree
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commitdiff
2018-12-11
Ben Soares
JAL-3130 Turns out Quit/About/Preferences handlers...
tree
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commitdiff
2018-12-06
Ben Soares
JAL-3130 incorporating feature/JAL-3063jaxbNoCastor...
tree
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commitdiff
2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
tree
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commitdiff
2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
tree
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commitdiff
2018-12-03
Ben Soares
JAL-3130 Added flagged runtime 'Reflection' check on...
tree
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commitdiff
2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
bug/JAL-2420revealAllMenu
tree
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commitdiff
2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
bug/JAL-3166npeAllRowsHidden
tree
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commitdiff
2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
tree
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commitdiff
2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
bug/JAL-3158selectionBroadcasts
tree
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commitdiff
2018-11-22
gmungoc
JAL-3161 limit tooltip and status updates to visible...
bug/JAL-3161annotationTooltipRange
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 drop redundant hidden representative sequences...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 JAL-2773 don’t need to call paintAlignment...
tree
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commitdiff
2018-11-19
Jim Procter
JAL-3127 tidier tree group colour -> view propagation
tree
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commitdiff
2018-11-19
gmungoc
JAL-3154 disable drag to reorder JTable columns
bug/JAL-3154tableColumnDrag
tree
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commitdiff
2018-11-09
Ben Soares
JAL-1988 This fixes the Quit response when user cancels...
tree
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commitdiff
2018-11-09
Jim Procter
JAL-3127 polished setColor after review
tree
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commitdiff
2018-11-08
Ben Soares
JAL-1988 JAL-3130 Now we're in Java 11 land, using...
tree
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commitdiff
2018-11-08
Ben Soares
JAL-1988 tidying, plus don't add Preferences to Tools...
tree
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commitdiff
2018-11-08
Ben Soares
JAL-1988 JAVA 11 enabled version with Quit, Preferences...
tree
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commitdiff
2018-11-05
Ben Soares
JAL-1988 Investigating...
tree
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commitdiff
2018-11-05
Ben Soares
JAL-3141 couple of minor fixes for example files being...
tree
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commitdiff
2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
tree
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commitdiff
2018-11-01
Ben Soares
JAL-3141 Preferences 'Backups' tab now fits. Moved...
tree
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commitdiff
2018-10-31
Ben Soares
JAL-3141 Preferences 'Backups' tab now working. Doesn...
tree
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commitdiff
2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 reinstate ability to set sequence ID colour...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup to create & propag...
tree
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commitdiff
2018-10-16
Jim Procter
JAL-3127 use AlignViewportI.addGroup() to add group...
tree
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commitdiff
2018-10-16
Jim Procter
viewport flag to indicate when structure view needs...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 TODO - resolve reference to Viewport for group...
tree
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commitdiff
2018-10-09
Jim Procter
JAL-3127 pass reference to AlignViewportI when creating...
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 comments, javadoc, method signature tweaks
feature/JAL-1244stretchStatusMsg
tree
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commitdiff
2018-10-08
gmungoc
JAL-1244 editSequence extract method refactoring
tree
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commitdiff
2018-10-05
gmungoc
JAL-1244 improved status message for insert/delete gap
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 status message for sequence and/or graph group...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 no status message (yet) for locked edit of...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message for insert/delete gaps on singl...
tree
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commitdiff
2018-10-04
gmungoc
JAL-1244 status message while dragging a stretch group
tree
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commitdiff
2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
tree
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commitdiff
2018-10-04
gmungoc
JAL-3093 unit tests, no mouse action over left/right...
tree
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commitdiff
2018-10-03
gmungoc
JAL-3093 tweaks to code and test for 3px gap above...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 unit tests for SeqPanel.findMousePosition
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 limited Consensus popup menu when in wrapped...
tree
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commitdiff
2018-10-02
gmungoc
JAL-3093 added MousePos.isOverAnnotation() for extra...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 'read-only' annotations when in wrapped mode
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 refactor (+test) Annotation Labels tooltip...
tree
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commitdiff
2018-10-01
gmungoc
JAL-3093 show annotation tooltips and status message...
tree
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commitdiff
2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
tree
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commitdiff
2018-09-27
gmungoc
JAL-2791 refactored Export Features to apply all visibi...
tree
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commitdiff
2018-09-26
gmungoc
JAL-3125 tidy up
tree
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commitdiff
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