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Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / gui /
2023-01-30 Jim ProcterMerge branch 'JAL-3878_ws-overhaul-3' into with_ws_over... tree | commitdiff
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api tree | commitdiff
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust... tree | commitdiff
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return... tree | commitdiff
2022-12-16 Jim ProcterJAL-4107 fix merge and avoid NPE tree | commitdiff
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2... tree | commitdiff
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl... tree | commitdiff
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge... tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting tree | commitdiff
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a... tree | commitdiff
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee... tree | commitdiff
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto... tree | commitdiff
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons... tree | commitdiff
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which... tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 change to jalview property name tree | commitdiff
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning... tree | commitdiff
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to... tree | commitdiff
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press... tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called... tree | commitdiff
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS... tree | commitdiff
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe... tree | commitdiff
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after... tree | commitdiff
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees... tree | commitdiff
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang tree | commitdiff
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees tree | commitdiff
2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard... tree | commitdiff
2022-04-21 Ben SoaresMerge branch 'develop' into task/JAL-3991_check_actual_... tree | commitdiff
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 Made info displayed only when needed (Java... tree | commitdiff
2022-04-06 Ben SoaresJAL-3991 Added information output about the slightly... tree | commitdiff
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply tree | commitdiff
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d... tree | commitdiff
2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar tree | commitdiff
2022-03-31 Jim ProcterJAL-3985 formatting tree | commitdiff
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries... tree | commitdiff
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop tree | commitdiff
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog... tree | commitdiff
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE... tree | commitdiff
2022-03-28 Mateusz WarownyJAL-3878 Patch preferences window to use new discoverer. tree | commitdiff
2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame tree | commitdiff
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's... tree | commitdiff
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing tree | commitdiff
2022-03-08 Jim ProcterJAL-3746 apply copyright to source tree | commitdiff
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0 tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse... tree | commitdiff
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti... tree | commitdiff
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2 tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab... tree | commitdiff
2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news... tree | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly... tree | commitdiff
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to... tree | commitdiff
2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and... tree | commitdiff
2022-02-15 Jim ProcterJAL-3906 use indicate to highlight current mousedOver... tree | commitdiff
2022-02-14 Jim ProcterJAL-3956 - PDBEntry objects constructed from 3D-Beacons... tree | commitdiff
2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu... tree | commitdiff
2022-02-11 Jim ProcterJAL-3931 fix - escape % symbols after urlencoding tree | commitdiff
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache... tree | commitdiff
2022-02-11 Ben SoaresMerge branch 'develop' into update/JAL-3949_abstracted_... tree | commitdiff
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework... tree | commitdiff
2022-02-07 Jim ProcterJAL-3186 remove ‘Variable Colour’ from the sequence... tree | commitdiff
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no... tree | commitdiff
2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop tree | commitdiff
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal... tree | commitdiff
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into... tree | commitdiff
2022-01-26 gmungocJAL-3725 restrict mapped virtual feature location to... tree | commitdiff
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model... tree | commitdiff
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use... tree | commitdiff
2021-12-08 Jim ProcterJAL-3931 remove % and - from ids so Pymol doesn’t strip... tree | commitdiff
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characte... tree | commitdiff
2021-12-02 Jim ProcterJAL-3904 use new AlignPanel API method tree | commitdiff
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the curren... tree | commitdiff
2021-11-25 Mateusz WarownyJAL-3927 Make url checks asynchronous in preferences... tree | commitdiff
2021-11-08 Jim ProcterJAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFil... tree | commitdiff
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written tree | commitdiff
2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated... tree | commitdiff
2021-11-05 Jim ProcterJAL-3829 format and tidy up unused code tree | commitdiff
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the... tree | commitdiff
2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d... tree | commitdiff
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures tree | commitdiff
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still... tree | commitdiff
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d... tree | commitdiff
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional... tree | commitdiff
2021-10-18 Jim ProcterJAL-3904 failing test tree | commitdiff
2021-10-01 gmungocJAL-3725 restrict mapped virtual feature location to... tree | commitdiff
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view... tree | commitdiff
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config tree | commitdiff
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking butto... tree | commitdiff
2021-10-01 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... tree | commitdiff
2021-09-30 gmungocJAL-3371 more fine-grained slider; set Param slider... tree | commitdiff
2021-09-29 Ben SoaresJAL-3885 Made the database JComboBox have StringPair... tree | commitdiff
2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any... tree | commitdiff
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