Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
[jalview.git] / src / jalview / gui /
2023-01-30 Jim ProcterMerge branch 'JAL-3878_ws-overhaul-3' into with_ws_over...
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br...
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -...
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed...
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust...
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return...
2022-12-16 Jim ProcterJAL-4107 fix merge and avoid NPE
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-08-08 Jim ProcterJAL-4046 JAL-3993 imports reformatting
2022-08-08 Jim ProcterJAL-4046 JAL-3993 patch for 2.11.2.4 release
2022-08-08 Jim ProcterMerge branch 'task/JAL-3991_check_actual_JAVA_VERSION_a...
2022-08-08 Jim ProcterJAL-4034 show the loading spinner when switching betwee...
2022-08-08 Jim ProcterMerge branch 'features/JAL-4034_improve_3dbeacons_butto...
2022-07-20 Jim ProcterJAL-4045 - don't apply distribution dependent scale...
2022-07-15 Ben SoaresJAL-4034 Use the new non-modal JDialog for 3DBeacons...
2022-07-15 Ben SoaresJAL-4034 Allow request for non-modal JDialog, which...
2022-07-12 Ben SoaresJAL-4034 change to jalview property name
2022-07-12 Ben SoaresJAL-4034 showConfirmDialog works for both desktop and...
2022-07-11 Ben SoaresJAL-4034 Non-blocking 3D Beacons query after warning...
2022-07-11 Ben SoaresJAL-4034 allow a jalview_property to set the threshold...
2022-07-04 Jim ProcterJAL-4034 fix #3 change uniprot ref fetch dialog to...
2022-07-04 Jim ProcterJAL-4034 Fix #2 show an icon and a button to press...
2022-06-13 Ben SoaresJAL-1988 Moved APQHandlers to jalview.jbgui and called...
2022-06-13 Jim ProcterMerge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
2022-06-13 Ben SoaresJAL-1988 JAL-3416 Using the flatlaf-extras About, Prefe...
2022-06-09 Jim ProcterJAL-4026 update the viewport’s wrapped width after...
2022-06-08 Jim ProcterMerge branch 'improvement/JAL-4023_snotation_for_trees...
2022-06-08 Jim ProcterJAL-4024 only render partially when new view overlaps... patch/JAL-4024_jumpScrollHang
2022-06-06 Jim ProcterJAL-4023 use %g for distances (scientific notation... improvement/JAL-4023_snotation_for_trees
2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard...
2022-04-21 Ben SoaresMerge branch 'develop' into task/JAL-3991_check_actual_...
2022-04-18 Jim ProcterJAL-3997 check for tooltip being null before checking... bug/JAL-3997_NPE_in_wrapped_mode
2022-04-06 Ben SoaresJAL-3991 Made info displayed only when needed (Java...
2022-04-06 Ben SoaresJAL-3991 Added information output about the slightly...
2022-04-05 Jim ProcterJAL-3990 gradle spotlessApply
2022-04-05 Jim ProcterMerge branch 'bug/JAL-3980_JAL-3981_tooltips_sequence_d...
2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar
2022-03-31 Jim ProcterJAL-3985 formatting
2022-03-31 Jim ProcterJAL-3985 split PDB id queries into multiple queries...
2022-03-30 Jim ProcterMerge branch 'patch/JAL-3976_3dbeaconsnull' into develop
2022-03-30 Jim ProcterJAL-360 JAL-3975 update parent for text colour dialog...
2022-03-30 Ben SoaresJAL-360 JAL-3975 make AlignFrame the parent of FeatureE...
2022-03-28 Mateusz WarownyJAL-3878 Patch preferences window to use new discoverer.
2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame
2022-03-24 Jim ProcterJAL-3981 strategic newlines to help speed up Java's...
2022-03-23 Jim ProcterJAL-3976 skip entries with null values when analyzing
2022-03-08 Jim ProcterJAL-3746 apply copyright to source
2022-03-08 Jim ProcterJAL-3438 spotless for 2.11.2.0
2022-03-08 Ben SoaresJAL-3103 Removed code and unused widgets for defaultBrowser
2022-03-08 Ben SoaresJAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
2022-03-08 Ben SoaresJAL-3103 Put jalview.jar first in getdown for .properti...
2022-03-07 Ben SoaresJAL-3103 Switched to (a wrapper around) BrowserLauncher2
2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disab...
2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news...
2022-03-02 Jim ProcterJAL-3619 fix up error messages and try to bail quietly...
2022-03-02 Jim ProcterJAL-3619 fix up warning message and minimal patch to...
2022-02-16 Jim ProcterJAL-3837 GPL license on splashscreen (finally !) and...
2022-02-15 Jim ProcterJAL-3906 use indicate to highlight current mousedOver...
2022-02-14 Jim ProcterJAL-3956 - PDBEntry objects constructed from 3D-Beacons...
2022-02-11 Jim ProcterMerge branch 'update/JAL-3949_jalview_bin_Console_to_cu...
2022-02-11 Jim ProcterJAL-3931 fix - escape % symbols after urlencoding
2022-02-11 Jim ProcterJAL-3949 - refactor logging from jalview.bin.Cache...
2022-02-11 Ben SoaresMerge branch 'develop' into update/JAL-3949_abstracted_...
2022-02-11 Ben SoaresJAL-3949 Complete new abstracted logging framework...
2022-02-07 Jim ProcterJAL-3186 remove ‘Variable Colour’ from the sequence...
2022-02-04 Ben SoaresJAL-3949 An attempt at converting to Log4j 2 -- no...
2022-01-28 Jim ProcterMerge branch 'merge/develop_JAL-3725' into develop
2022-01-27 Jim ProcterMerge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
2022-01-26 Jim ProcterMerge branch 'task/JAL-3763_newDatasetForCds' into...
2022-01-26 gmungocJAL-3725 restrict mapped virtual feature location to...
2021-12-13 Jim ProcterJAL-3855 JAL-3829 don’t need to make up alphafold model...
2021-12-08 Jim ProcterJAL-3616 update messages/tooltips/menu items to use...
2021-12-08 Jim ProcterJAL-3931 remove % and - from ids so Pymol doesn’t strip...
2021-12-08 Jim ProcterJAL-3929 URLencode pdbid to remove problematic characte...
2021-12-02 Jim ProcterJAL-3904 use new AlignPanel API method
2021-12-02 Jim ProcterJAL-3904 simple method to make an alignPanel the curren...
2021-11-25 Mateusz WarownyJAL-3927 Make url checks asynchronous in preferences...
2021-11-08 Jim ProcterJAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFil...
2021-11-08 Jim ProcterJAL-3921 wait around until session file has been written
2021-11-05 Jim ProcterJAL-3829 remove duplicate IDs in 3DBeacons generated...
2021-11-05 Jim ProcterJAL-3829 format and tidy up unused code
2021-11-05 Jim ProcterJAL-3919 use model format field to ensure we get the...
2021-11-05 Jim ProcterJAL-3875 fully reset filter combo-box when fetch 3d...
2021-11-03 Jim ProcterJAL-3916 TODO for improved selection of covering structures
2021-11-03 Jim ProcterJAL-3915 remove RNAview opts from preferences. Still...
2021-11-02 Jim ProcterJAL-3875 test case and patch to verify the query 3d...
2021-10-18 Jim ProcterJAL-3904 override buildActionMenu to add in additional...
2021-10-18 Jim ProcterJAL-3904 failing test
2021-10-01 gmungocJAL-3725 restrict mapped virtual feature location to...
2021-10-01 Jim ProcterJAL-3616 show name of structure viewer in ‘new view...
2021-10-01 Jim ProcterJAL-3616 explicit configure external viewer config
2021-10-01 Jim ProcterJAL-3829 fetch 3D beacons now started by clicking butto...
2021-10-01 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3...
2021-09-30 gmungocJAL-3371 more fine-grained slider; set Param slider...
2021-09-29 Ben SoaresJAL-3885 Made the database JComboBox have StringPair...
2021-09-29 Jim ProcterJAL-3829 report when 3d-beacons doesn’t provide any...
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