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JAL-2599 fix for information annotation buttons
[jalview.git]
/
src
/
jalview
/
gui
/
2017-08-02
TZVanaalten
JAL-2599 fix for information annotation buttons
tree
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commitdiff
2017-07-31
TZVanaalten
JAL-2629 add hmmalign command
tree
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commitdiff
2017-07-27
TZVanaalten
JAL-2629 implement hmmbuild
tree
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commitdiff
2017-07-27
TZVanaalten
JAL-2629 moved HMM storage location to placeholder...
tree
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commitdiff
2017-07-25
TZVanaalten
JAL-2629 add non-functional HMMER menu
tree
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commitdiff
2017-07-24
tzvanaalten
JAL-2616 add placeholder sequence for HMM, does not...
tree
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commitdiff
2017-07-20
TZVanaalten
JAL-2616 remove statistical analysis from AlignFrame
tree
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commitdiff
2017-07-20
TZVanaalten
JAL-2599 add ability to process RNA HMMer files
tree
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commitdiff
2017-07-14
TZVanaalten
add partial button fix to annotation and statistics...
features/hmmer_statistics
tree
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commitdiff
2017-07-12
TZVanaalten
test HMM annotaTION
tree
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commitdiff
2017-07-11
TZVanaalten
complete Information Content annotation
tree
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commitdiff
2017-06-29
TZVanaalten
transferred the storage position of the HMM to annotations
tree
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commitdiff
2017-06-23
TZVanaalten
add HMMER colour scheme
tree
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commitdiff
2017-06-22
TZVanaalten
fully integrate HMMER3 file format into Jalview
tree
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commitdiff
2017-05-31
Jim Procter
Merge branch 'JAL-2571' into develop
tree
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commitdiff
2017-05-31
gmungoc
JAL-2547 handle contact features 'around' a gap correctly
tree
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commitdiff
2017-05-30
kiramt
JAL-2573 Fixes for alignment < viewport width, and...
JAL-2571
tree
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commitdiff
2017-05-30
gmungoc
JAL-2547 tooltip/AmendFeatures on gap straddled by...
tree
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commitdiff
2017-05-30
kiramt
JAL-2571 Corrected alignment width/height checks to...
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'bug/JAL-2034contextchange' into develop
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'features/JAL-2465_No-mapping_Jmol-structu...
tree
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commitdiff
2017-05-29
Jim Procter
Merge branch 'bug/JAL-2536' into develop
tree
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commitdiff
2017-05-29
Jim Procter
JAL-2536 tweak javadoc wording
tree
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commitdiff
2017-05-27
Jim Procter
Merge branch 'bug/JAL-2491' into develop
tree
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commitdiff
2017-05-27
Jim Procter
Merge branch 'bug/JAL-2547tooltipOnGap' into develop
tree
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commitdiff
2017-05-27
Jim Procter
JAL-2526 test and documentation for SeqPanel.setStatus...
tree
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commitdiff
2017-05-25
kiramt
JAL-2034 don't update overview after click without...
tree
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commitdiff
2017-05-24
kiramt
JAL-2551 Fix to group colouring when group extent is...
bug/JAL-2551
tree
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commitdiff
2017-05-23
gmungoc
JAL-2547 don't show features in tooltip over a gap
bug/JAL-2547tooltipOnGap
tree
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commitdiff
2017-05-22
gmungoc
JAL-2504 update the right feature colour when creating...
bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-19
gmungoc
JAL-2526 removed redundant call to Sequence.findPosition()
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'bug/JAL-2510amendFeatures' into develop
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'features/JAL-2447experimentalFlag' into...
tree
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commitdiff
2017-05-17
gmungoc
JAL-2504 use (and update) defaults for new feature...
tree
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commitdiff
2017-05-17
gmungoc
Merge branch 'develop' into bug/JAL-2510amendFeatures
tree
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commitdiff
2017-05-16
kiramt
JAL-2536 Overview window sizing not subject to min...
bug/JAL-2536
tree
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commitdiff
2017-05-16
kiramt
Merge branch 'develop' into bug/JAL-2491
tree
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commitdiff
2017-05-16
kiramt
JAL-2491 Better merge
tree
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commitdiff
2017-05-15
gmungoc
JAL-2532 new feature types and colour changes from...
tree
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commitdiff
2017-05-15
Jim Procter
Merge branch 'features/JAL-2376_add-horizontal-bar...
tree
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commitdiff
2017-05-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-05-15
kiramt
JAL-2491 Tidies
tree
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commitdiff
2017-05-12
kiramt
JAL-2491 Tidies to Overview panel calls in light of...
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2435splitScreenFont' into...
tree
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commitdiff
2017-05-12
Jim Procter
JAL-2435 mirror antiAlias setting between cDNA and...
tree
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commitdiff
2017-05-12
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
tree
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commitdiff
2017-05-12
kiramt
JAL-2491 Renamed comp scrolling flag for consistency...
tree
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commitdiff
2017-05-12
kiramt
JAL-2491 Tweaks for applet
tree
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commitdiff
2017-05-11
kiramt
JAL-2491 First port to applet
tree
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commitdiff
2017-05-11
kiramt
JAL-2491 Unit tests and updates
tree
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commitdiff
2017-05-10
kiramt
JAL-2491 Make it work with cursor movement
tree
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commitdiff
2017-05-10
kiramt
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-10
kiramt
JAL-2522 Fix to cursor scrolling
tree
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commitdiff
2017-05-10
kiramt
JAL-2491 Cursor scrolling
tree
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commitdiff
2017-05-09
kiramt
JAL-2491 Tidies and more refactoring
tree
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commitdiff
2017-05-09
kiramt
JAL-2491 Resolved highlighting and initialisation problems
tree
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commitdiff
2017-05-09
gmungoc
JAL-1632 correct i18n and NPE
tree
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commitdiff
2017-05-09
kiramt
JAL-2388 Added checkbox to toggle hidden columns menu...
tree
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commitdiff
2017-05-08
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-08
gmungoc
JAL-1632 i18n for warning messages
tree
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commitdiff
2017-05-08
kiramt
JAL-2512 Fix to show non-gap positions in None colour...
tree
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commitdiff
2017-05-08
kiramt
JAL-2491 Started moving other scrolling fns into viewpo...
tree
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commitdiff
2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-05-05
gmungoc
JAL-964 JAL-2510 update Feature Settings from Amend...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch
tree
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commitdiff
2017-05-05
kiramt
JAL-2491 Scrolling and interaction with overview/find...
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
features/JAL-2388hiddencolumnschanges
tree
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commitdiff
2017-05-05
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-05-05
kiramt
JAL-2491 More working split panel + new scrolling
tree
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commitdiff
2017-05-04
gmungoc
JAL-2506 allow graduated colour as default in new Seque...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2510 ensure modified feature type is displayed
tree
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commitdiff
2017-05-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2504 allow feature type to be specified for Create...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
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commitdiff
2017-05-04
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeann...
tree
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commitdiff
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2393 JAL-2416 refresh the score model menu when...
features/JAL-2393customMatrices
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2503 show threshold slider for quantitative annotat...
tree
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commitdiff
2017-05-03
kiramt
JAL-2491 Tidies
tree
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commitdiff
2017-05-03
kiramt
JAL-2491 Wrapped panel scrolling
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 honour percentage checkbox when entering value...
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 recover state for ‘display percentage’ checkbox
tree
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commitdiff
2017-05-03
Jim Procter
JAL-2432 simplify code
tree
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commitdiff
2017-05-03
kiramt
JAL-2491 sort of working overview/find interaction...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 validate CalculationChooser when selection...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 enable/disable CalculationChooser buttons...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 compare size of input against minimums for...
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 OK->Calculate, Cancel->Close buttons
tree
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commitdiff
2017-05-02
Jim Procter
JAL-1632 removed ‘tree’ option and changed dialog layout
tree
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commitdiff
2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 inlined two 1-line methods
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
tree
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commitdiff
2017-05-02
kiramt
JAL-2491 first addition of new event
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 missed commit for refactore renaming of getPdb...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2465 bugfix and rerefactor renamed getPdbFile(...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2376 copied out patch from Phyre branch
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 use constant for preference token
tree
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commitdiff
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