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Merge branch 'develop' into features/r2_11_2_alphafold/JAL-629
[jalview.git] / src / jalview / gui /
2023-08-31 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-08-28 James ProcterJAL-4253 drop the bottom line so it lines up with the... tree | commitdiff
2023-08-24 Ben SoaresJAL-629 Avoid hidden options dialog when saving in... tree | commitdiff
2023-08-23 Ben SoaresJAL-4250 Simplification of polygons and adjustments... tree | commitdiff
2023-07-20 James ProcterJAL-3855 tree title for PAE matrix tree is PAE Matrix... patch/JAL-3855_fixup_pae tree | commitdiff
2023-07-20 James ProcterJAL-3855 auto select clusters and fix up colouring... tree | commitdiff
2023-07-18 James ProcterJAL-3858 fix off-by-one in matrix visualisation and... tree | commitdiff
2023-07-18 James ProcterJAL-3858 flip diagonal so matrix visualisation is top... tree | commitdiff
2023-07-06 James ProcterJAL-629 make —structure image work again after threadin... tree | commitdiff
2023-07-06 James ProcterJAL-4217 catch case when the structure viewer doesn... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-06 James ProcterJAL-4217 wrap imageExport CLI method's call to imageExp... tree | commitdiff
2023-07-05 James ProcterMerge branch 'patch/JAL-4213_addref_with_selection... tree | commitdiff
2023-06-30 James ProcterJAL-4217 try really hard to shut down and dispose of... tree | commitdiff
2023-06-22 James ProcterJAL-4213 don’t pass active selection when actioning... patch/JAL-4213_addref_with_selection tree | commitdiff
2023-06-21 James ProcterMerge branch 'patch/JAL-4196_structure_viewer_synchroni... patch/JAL-4196_structure_viewer_synchronising tree | commitdiff
2023-06-14 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-09 Ben SoaresJAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest... tree | commitdiff
2023-06-09 Ben SoaresJAL-3599 Deliberate NPE to see if build plan fails tree | commitdiff
2023-06-08 Ben SoaresJAL-3599 gradle tasks to test JalviewJS launches in... tree | commitdiff
2023-06-08 James ProcterJAL-4196 structure view cli tests wait using new jalvie... tree | commitdiff
2023-06-08 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-07 James ProcterJAL-4195 add exception handling for all image output... tree | commitdiff
2023-06-07 James ProcterMerge branch 'patch/JAL-4195_cli_eps_export_npe' into... tree | commitdiff
2023-06-07 Ben SoaresMerge branch 'develop' into task/JAL-4001_migrate_googl... tree | commitdiff
2023-06-07 Ben SoaresJAL-4001 GA4 tracking is now ENABLED. Currently loggin... tree | commitdiff
2023-06-07 James ProcterJAL-4195 tidy up desktop instances after creating them tree | commitdiff
2023-06-06 James ProcterJAL-4195 report full stack trace for exceptions raised... tree | commitdiff
2023-06-01 Ben SoaresMerge branch 'develop' into improvement/JAL-4193_cl_arg... tree | commitdiff
2023-06-01 Ben SoaresJAL-4193 JAL-4194 sessionProperties layer in Cache... tree | commitdiff
2023-06-01 James ProcterJAL-4134 properly resolve positions in associated align... features/JAL-4134_use_annotation_row_for_colours_and_groups tree | commitdiff
2023-05-30 James ProcterJAL-4134 repaint the tree or alignment view(s) when... tree | commitdiff
2023-05-30 James ProcterJAL-4134 highlight selected column nodes on the linked... tree | commitdiff
2023-05-29 James ProcterJAL-4190 - escape clears selected nodes tree | commitdiff
2023-05-29 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-26 Ben SoaresJAL-4125 Fixed non-closing external viewers, also added... tree | commitdiff
2023-05-26 James ProcterJAL-4134 internationalise popup menu entries and show... tree | commitdiff
2023-05-26 James ProcterJAL-1556 fix bad import tree | commitdiff
2023-05-26 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-26 James ProcterJAL-1556 initial implementation - no tests as yet but... tree | commitdiff
2023-05-26 Ben SoaresJAL-629 dispose of non-displaying StructureChooser... tree | commitdiff
2023-05-26 Ben SoaresMerge branch 'develop' into feature/JAL-3416_update_to_... feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries tree | commitdiff
2023-05-25 James ProcterJAL-4134 popup menu and annotation row property to... tree | commitdiff
2023-05-25 James ProcterJAL-2381 copy and paste sequence also copies contact... tree | commitdiff
2023-05-25 Ben SoaresJAL-3820 Create and use 'Jalview app' symblinks to... tree | commitdiff
2023-05-25 Ben SoaresJAL-4186 Turn JvOptionPane Callable<Void> handlers... tree | commitdiff
2023-05-24 Ben SoaresJAL-4186 attempts to work in jalviewjs, still not working tree | commitdiff
2023-05-24 Ben SoaresJAL-4186 fix dialog. broken in JalviewJS tree | commitdiff
2023-05-23 Ben SoaresJAL-629 Added --structureimage code and formatting... tree | commitdiff
2023-05-22 Ben SoaresJAL-629 --structureimage with formatting args. tree | commitdiff
2023-05-22 James ProcterJAL-4134 map between column and node selections better... tree | commitdiff
2023-05-22 James ProcterJAL-4134 efficiency improvement tree | commitdiff
2023-05-22 James ProcterJAL-4134 only build tree when showing it in the tree... tree | commitdiff
2023-05-22 James ProcterJAL-1551 spotless tree | commitdiff
2023-05-19 James ProcterMerge branch 'develop' into features/JAL-4134_use_annot... tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-19 James ProcterJAL-1551 spotlessApply tree | commitdiff
2023-05-18 James ProcterJAL-4134 support recovery of mapped positions for raw... tree | commitdiff
2023-05-18 James ProcterJAL-4134 column grouping model and methods moved to... tree | commitdiff
2023-05-14 James ProcterJAL-2349 store/restore mappable contact matrix in proje... tree | commitdiff
2023-05-11 Ben SoaresJAL-629 Fix --tempfac. Hide non-working --notempfac... tree | commitdiff
2023-05-05 Ben SoaresJAL-629 test fixes tree | commitdiff
2023-05-02 Ben SoaresJAL-629 Add --renderer arg/subval for vector output... tree | commitdiff
2023-05-01 James ProcterMerge branch 'features/JAL-4134_treeviewerforcolumns... tree | commitdiff
2023-05-01 James ProcterJAL-4177 disable ‘Cancel’ as well - since we as yet... features/JAL-4134_treeviewerforcolumns tree | commitdiff
2023-05-01 James ProcterJAL-4177 disable add/new view when an import is started. tree | commitdiff
2023-05-01 James ProcterJAL-4134 double click to select column groups tree | commitdiff
2023-05-01 James ProcterJAL-3858 report errors when trying to parse JSON to... tree | commitdiff
2023-04-22 Ben SoaresJAL-629 Test and fix --annotation --ssannotation args... tree | commitdiff
2023-04-19 Ben SoaresJAL-629 Now showing temp fac and secondary structure... tree | commitdiff
2023-04-14 Ben SoaresJAL-629 Adding PAE and TFType at structure loading... tree | commitdiff
2023-04-12 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-03-28 Ben SoaresJAL-629 Opening files in new windows. not working yet tree | commitdiff
2023-03-24 James ProcterJAL-4134 - store colours in annotation row, so colour... tree | commitdiff
2023-03-24 James ProcterJAL-4158 first attempt at stashing colours for contact... tree | commitdiff
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold... tree | commitdiff
2023-03-24 Ben SoaresJAL-629 Test tidyup tree | commitdiff
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to... tree | commitdiff
2023-03-20 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe... tree | commitdiff
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr... tree | commitdiff
2023-03-20 James ProcterJAL-2349 JAL-4134 Console log messages for contact... tree | commitdiff
2023-03-20 James ProcterJAL-4134 propagate column selection changes in tree... tree | commitdiff
2023-03-20 James ProcterJAL-4134 fix off-by-one in selection tree | commitdiff
2023-03-20 James ProcterJAL-4134 fix NPEs when matrix not resolved or alignment... tree | commitdiff
2023-03-20 James ProcterJAL-4134 better popup menu name ‘Tree for Contact Matrix’ tree | commitdiff
2023-03-17 Ben SoaresJAL-629 All applications System.exits going through... tree | commitdiff
2023-03-17 James ProcterJAL-4134 fix up column selection when hidden regions... tree | commitdiff
2023-03-17 James ProcterJAL-4134 store/restore Newick tree for PAE annotation row tree | commitdiff
2023-03-15 James ProcterJAL-4091 JAL-4147 - revised annotation label display... tree | commitdiff
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader... tree | commitdiff
2023-03-08 James ProcterJAL-2349 handle matrix_clicked on mouse_release rather... tree | commitdiff
2023-03-08 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into... tree | commitdiff
2023-03-08 Ben SoaresJAL-629 stash some TFType and PAEFile info into a PDBEntry tree | commitdiff
2023-03-06 Ben SoaresJAL-629 Fix null AlignPanel. More descriptive label... tree | commitdiff
2023-03-03 Ben SoaresJAL-629 Improved consistency of ArgParser classes ... tree | commitdiff
2023-03-02 Ben SoaresJAL-629 Removal of unnecessary methods. Set pLTTD tempf... tree | commitdiff
2023-03-02 Ben SoaresJAL-629 Some refactoring to allow more flexible use... tree | commitdiff
2023-03-01 James ProcterJAL-4134 hold ctrl to select groups containing rows... tree | commitdiff
2023-02-27 Ben SoaresJAL-629 add AF examples for FER1_SPIOL. Link and displa... tree | commitdiff
2023-02-27 James ProcterJAL-4134 tree panel shouldn’t try to redraw before... tree | commitdiff
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