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Merge branch 'develop' into features/JAL-2393customMatrices
[jalview.git] / src / jalview / gui /
2017-03-24 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-24 gmungocJAL-2428 simplify TreeModel constructors, add getOrigin... tree | commitdiff
2017-03-24 Jim ProcterJAL-2360 fix applet build by separating castor XML... tree | commitdiff
2017-03-24 gmungocJAL-1632 TreeChooser renamed CalculationChooser, text... tree | commitdiff
2017-03-24 gmungocJAL-1632 named parameters tree | commitdiff
2017-03-24 gmungocJAL-838 move two callers off Comparison.PID and depreca... tree | commitdiff
2017-03-23 gmungocJAL-1632 suppress PID parameter options in Tree/PCA... tree | commitdiff
2017-03-23 gmungocJAL-2464 fix cancel tree print behaviour tree | commitdiff
2017-03-23 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota... tree | commitdiff
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence... tree | commitdiff
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... tree | commitdiff
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into... tree | commitdiff
2017-03-20 kiramtJAL-2388 Comment typo tree | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code tree | commitdiff
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... tree | commitdiff
2017-03-15 kiramtJAL-2388 Unit tests and tidies tree | commitdiff
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour tree | commitdiff
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui... tree | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... tree | commitdiff
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit... tree | commitdiff
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... tree | commitdiff
2017-03-07 kiramtJAL-2388 Missed commit tree | commitdiff
2017-03-06 kiramtJAL-2388 Dependency tidy tree | commitdiff
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui... tree | commitdiff
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... tree | commitdiff
2017-03-06 gmungocJAL-2428 separate TreeModel from TreeBuilder/NJTree... tree | commitdiff
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... tree | commitdiff
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu... tree | commitdiff
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp... tree | commitdiff
2017-03-01 kiramtJAL-2388 Reverted to previous tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile tree | commitdiff
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... tree | commitdiff
2017-02-28 gmungocJAL-1632 disable parameters not applicable for score... tree | commitdiff
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... tree | commitdiff
2017-02-27 gmungocJAL-1632 dialog to calculate either Tree or PCA tree | commitdiff
2017-02-27 gmungocJAL-1632 similarity options on TreeChooser panel affect... tree | commitdiff
2017-02-27 kiramtJAL-2388 Minor refactoring tree | commitdiff
2017-02-27 gmungocJAL-1632 add score model params to PCAModel and PCA... tree | commitdiff
2017-02-27 gmungocJAL-1632 refactored NJTree constructor to include Simil... tree | commitdiff
2017-02-27 gmungocJAL-2403 JAL-838 remove unused methods and unneeded... tree | commitdiff
2017-02-23 gmungocJAL-2403 JAL-1483 changes to ScoreModelI hierarchy... tree | commitdiff
2017-02-23 kiramtJAL-2388 Unit tests in progress tree | commitdiff
2017-02-21 gmungocMerge branch 'develop' into features/JAL-2393customMatrices tree | commitdiff
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into tree | commitdiff
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow tree | commitdiff
2017-02-21 kiramtJAL-2421 Unit test tree | commitdiff
2017-02-20 gmungocJAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix... tree | commitdiff
2017-02-17 gmungocJAL-2423 refactored method to build panel title for... tree | commitdiff
2017-02-17 kiramtJAL-2388 Incomplete unit tests tree | commitdiff
2017-02-17 gmungocJAL-2403 constants for "NJ", "AV" tree | commitdiff
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and... tree | commitdiff
2017-02-15 Jim ProcterJAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu tree | commitdiff
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection tree | commitdiff
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to... tree | commitdiff
2017-02-14 gmungocParsing moved to (new) ScoreMatrixFile, drag and drop... tree | commitdiff
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface... tree | commitdiff
2017-02-13 gmungocJAL-1632 JAL-2416 load score matrices from file, as... tree | commitdiff
2017-02-13 gmungocJAL-1632 first cut of Tree chooser dialog and ScoreMode... tree | commitdiff
2017-02-10 gmungocJAL-2371 small move of code, typo correction tree | commitdiff
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel tree | commitdiff
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316 tree | commitdiff
2017-02-09 gmungocJAL-2401 change 'Lower Case Colour' to checkbox with... tree | commitdiff
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is... tree | commitdiff
2017-02-08 gmungocJAL-2405 set context on selection group for tailored... tree | commitdiff
2017-02-08 gmungocJAL-2401 fix for NPE on selectedButtons, tweak for... tree | commitdiff
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-07 Jim ProcterMerge branch 'features/JAL-2371collectionColourScheme... tree | commitdiff
2017-02-07 gmungocJAL-2401 Lower Case Colour toggleable, help text added tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-27 kiramtJAL-2366 Removed unneeded setEnabled calls tree | commitdiff
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid... tree | commitdiff
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... tree | commitdiff
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour... tree | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-20 gmungocJAL-2385 update slider settings when switching slider... tree | commitdiff
2017-01-20 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-20 gmungocJAL-2383 check for null, spelling tree | commitdiff
2017-01-20 gmungocJAL-2383 make popup colour menu order and wording consi... tree | commitdiff
2017-01-20 gmungocJAL-2383 restore group conservation slider setting... tree | commitdiff
2017-01-20 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-19 gmungocJAL-2383 restore PID colour threshold from project... tree | commitdiff
2017-01-19 gmungocJAL-2370 corrected applet mouse drag, refactored into... tree | commitdiff
2017-01-17 gmungocJAL-1933 update threshold on focus lost in text field features/JAL-2295setChimeraAttributes tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2295setChimera... tree | commitdiff
2017-01-17 gmungocJAL-2370 fix bug when hiding a range including two... tree | commitdiff
2017-01-17 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit... tree | commitdiff
2017-01-17 gmungocMerge branch 'develop' into features/JAL-2360colourSche... tree | commitdiff
2017-01-12 gmungocJAL-2379 null references to PCA model when panel is... tree | commitdiff
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