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JAL-4059 fix that boolean for non-value query string args
[jalview.git]
/
src
/
jalview
/
gui
/
2023-08-09
Ben Soares
JAL-244 Fix window size narrow adjustment not becoming...
feature/JAL-244_Automatically_adjust_left_margin_to_avoid_cropping_annotation_labels
tree
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commitdiff
2023-08-08
Ben Soares
JAL-244 Added light grey marks to indicate regions...
tree
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commitdiff
2023-08-08
Ben Soares
JAL-244 Fix mismatched vertical positioning of sequence...
tree
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commitdiff
2023-08-07
Ben Soares
JAL-244 Avoid working on the Ids Graphics object when...
tree
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commitdiff
2023-08-04
Ben Soares
JAL-244 Adjust wrapped alignment widths to always maint...
tree
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commitdiff
2023-08-02
Ben Soares
JAL-244 Fix buglet with automatic change in id column...
tree
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commitdiff
2023-08-01
Ben Soares
JAL-244 More control of automatic idWidth adjustments...
tree
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commitdiff
2023-07-27
Ben Soares
Merge branch 'develop' into feature/JAL-244_Automatical...
tree
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commitdiff
2023-07-27
Ben Soares
JAL-244 Allow wrap manual adjustments to be smaller...
tree
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commitdiff
2023-07-27
Ben Soares
JAL-244 Allow adjusting Id column width in wrap mode...
tree
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commitdiff
2023-07-25
Ben Soares
JAL-244 testing without AlignFrame for --wrap
tree
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commitdiff
2023-07-21
Ben Soares
JAL-244 Fixed idWidth labels in headless mode for non...
tree
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commitdiff
2023-07-20
Ben Soares
JAL-244 More accurate width calculation, allow increase...
tree
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commitdiff
2023-07-20
James Procter
JAL-3855 tree title for PAE matrix tree is PAE Matrix...
patch/JAL-3855_fixup_pae
tree
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commitdiff
2023-07-20
James Procter
JAL-3855 auto select clusters and fix up colouring...
tree
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commitdiff
2023-07-19
Ben Soares
JAL-244 Changes to Annotation labels width now adjusts...
tree
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commitdiff
2023-07-18
James Procter
JAL-3858 fix off-by-one in matrix visualisation and...
tree
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commitdiff
2023-07-18
James Procter
JAL-3858 flip diagonal so matrix visualisation is top...
tree
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commitdiff
2023-07-06
James Procter
JAL-629 make —structure image work again after threadin...
tree
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commitdiff
2023-07-06
James Procter
JAL-4217 catch case when the structure viewer doesn...
tree
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commitdiff
2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExp...
tree
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commitdiff
2023-07-06
James Procter
JAL-4217 wrap imageExport CLI method's call to imageExp...
tree
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commitdiff
2023-07-05
James Procter
Merge branch 'patch/JAL-4213_addref_with_selection...
tree
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commitdiff
2023-06-30
James Procter
JAL-4217 try really hard to shut down and dispose of...
tree
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commitdiff
2023-06-29
Ben Soares
JAL-4214 Linux only: Disable menus when internal modal...
bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux
tree
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commitdiff
2023-06-28
Ben Soares
JAL-4214 Make modal internal frame disappear when main...
tree
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commitdiff
2023-06-28
Ben Soares
JAL-4214 Close modal internal frame if JRootPane activi...
tree
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commitdiff
2023-06-26
Ben Soares
Merge branch 'develop' into improvement/JAL-4206_improv...
improvement/JAL-4206_improve_JalviewFileChooser_for_flatlaf
tree
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commitdiff
2023-06-22
James Procter
JAL-4213 don’t pass active selection when actioning...
patch/JAL-4213_addref_with_selection
tree
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commitdiff
2023-06-21
James Procter
Merge branch 'patch/JAL-4196_structure_viewer_synchroni...
patch/JAL-4196_structure_viewer_synchronising
tree
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commitdiff
2023-06-15
Ben Soares
JAL-4206 Use All Known Alignment Files as default until...
tree
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commitdiff
2023-06-14
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-13
Ben Soares
JAL-3416 Removed a few more JInternalFrame icons with...
tree
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commitdiff
2023-06-09
Ben Soares
JAL-3599 Make jalviewjs dependOn jalviewjsLaunchTest...
tree
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commitdiff
2023-06-09
Ben Soares
JAL-3599 Deliberate NPE to see if build plan fails
tree
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commitdiff
2023-06-08
Ben Soares
JAL-3599 gradle tasks to test JalviewJS launches in...
tree
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commitdiff
2023-06-08
James Procter
JAL-4196 structure view cli tests wait using new jalvie...
tree
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commitdiff
2023-06-08
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-07
James Procter
JAL-4195 add exception handling for all image output...
tree
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commitdiff
2023-06-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
tree
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commitdiff
2023-06-07
Ben Soares
Merge branch 'develop' into task/JAL-4001_migrate_googl...
tree
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commitdiff
2023-06-07
Ben Soares
JAL-4001 GA4 tracking is now ENABLED. Currently loggin...
tree
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commitdiff
2023-06-07
James Procter
JAL-4195 tidy up desktop instances after creating them
tree
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commitdiff
2023-06-06
James Procter
JAL-4195 report full stack trace for exceptions raised...
tree
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commitdiff
2023-06-01
Ben Soares
Merge branch 'develop' into improvement/JAL-4193_cl_arg...
tree
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commitdiff
2023-06-01
Ben Soares
JAL-4193 JAL-4194 sessionProperties layer in Cache...
tree
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commitdiff
2023-06-01
James Procter
JAL-4134 properly resolve positions in associated align...
features/JAL-4134_use_annotation_row_for_colours_and_groups
tree
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commitdiff
2023-05-30
James Procter
JAL-4134 repaint the tree or alignment view(s) when...
tree
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commitdiff
2023-05-30
James Procter
JAL-4134 highlight selected column nodes on the linked...
tree
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commitdiff
2023-05-29
James Procter
JAL-4190 - escape clears selected nodes
tree
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commitdiff
2023-05-29
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
2023-05-26
Ben Soares
JAL-4125 Fixed non-closing external viewers, also added...
tree
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commitdiff
2023-05-26
James Procter
JAL-4134 internationalise popup menu entries and show...
tree
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commitdiff
2023-05-26
James Procter
JAL-1556 fix bad import
tree
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commitdiff
2023-05-26
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
2023-05-26
James Procter
JAL-1556 initial implementation - no tests as yet but...
tree
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commitdiff
2023-05-26
Ben Soares
JAL-629 dispose of non-displaying StructureChooser...
tree
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commitdiff
2023-05-26
Ben Soares
Merge branch 'develop' into feature/JAL-3416_update_to_...
feature/JAL-3416_update_to_flatlaf_3.1.1_with_unpacked_native_libraries
tree
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commitdiff
2023-05-25
James Procter
JAL-4134 popup menu and annotation row property to...
tree
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commitdiff
2023-05-25
James Procter
JAL-2381 copy and paste sequence also copies contact...
tree
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commitdiff
2023-05-25
Ben Soares
JAL-3820 Create and use 'Jalview app' symblinks to...
tree
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commitdiff
2023-05-25
Ben Soares
JAL-4186 Turn JvOptionPane Callable<Void> handlers...
tree
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commitdiff
2023-05-24
Ben Soares
JAL-4186 attempts to work in jalviewjs, still not working
tree
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commitdiff
2023-05-24
Ben Soares
JAL-4186 fix dialog. broken in JalviewJS
tree
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commitdiff
2023-05-23
Ben Soares
JAL-629 Added --structureimage code and formatting...
tree
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commitdiff
2023-05-22
Ben Soares
JAL-629 --structureimage with formatting args.
tree
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commitdiff
2023-05-22
James Procter
JAL-4134 map between column and node selections better...
tree
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commitdiff
2023-05-22
James Procter
JAL-4134 efficiency improvement
tree
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commitdiff
2023-05-22
James Procter
JAL-4134 only build tree when showing it in the tree...
tree
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commitdiff
2023-05-22
James Procter
JAL-1551 spotless
tree
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commitdiff
2023-05-19
James Procter
Merge branch 'develop' into features/JAL-4134_use_annot...
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-19
James Procter
JAL-1551 spotlessApply
tree
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commitdiff
2023-05-18
James Procter
JAL-4134 support recovery of mapped positions for raw...
tree
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commitdiff
2023-05-18
James Procter
JAL-4134 column grouping model and methods moved to...
tree
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commitdiff
2023-05-14
James Procter
JAL-2349 store/restore mappable contact matrix in proje...
tree
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commitdiff
2023-05-11
Ben Soares
JAL-629 Fix --tempfac. Hide non-working --notempfac...
tree
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commitdiff
2023-05-05
Ben Soares
JAL-629 test fixes
tree
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commitdiff
2023-05-02
Ben Soares
JAL-629 Add --renderer arg/subval for vector output...
tree
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commitdiff
2023-05-01
James Procter
Merge branch 'features/JAL-4134_treeviewerforcolumns...
tree
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commitdiff
2023-05-01
James Procter
JAL-4177 disable ‘Cancel’ as well - since we as yet...
features/JAL-4134_treeviewerforcolumns
tree
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commitdiff
2023-05-01
James Procter
JAL-4177 disable add/new view when an import is started.
tree
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commitdiff
2023-05-01
James Procter
JAL-4134 double click to select column groups
tree
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commitdiff
2023-05-01
James Procter
JAL-3858 report errors when trying to parse JSON to...
tree
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commitdiff
2023-04-22
Ben Soares
JAL-629 Test and fix --annotation --ssannotation args...
tree
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commitdiff
2023-04-19
Ben Soares
JAL-629 Now showing temp fac and secondary structure...
tree
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commitdiff
2023-04-14
Ben Soares
JAL-629 Adding PAE and TFType at structure loading...
tree
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commitdiff
2023-04-12
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-03-28
Ben Soares
JAL-629 Opening files in new windows. not working yet
tree
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commitdiff
2023-03-24
James Procter
JAL-4134 - store colours in annotation row, so colour...
tree
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commitdiff
2023-03-24
James Procter
JAL-4158 first attempt at stashing colours for contact...
tree
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commitdiff
2023-03-24
Ben Soares
Merge branch 'develop' into features/r2_11_2_alphafold...
tree
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commitdiff
2023-03-24
Ben Soares
JAL-629 Test tidyup
tree
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commitdiff
2023-03-23
Ben Soares
JAL-629 refactor ArgParser and helper classes all to...
tree
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commitdiff
2023-03-20
James Procter
Merge branch 'develop' into features/JAL-4134_treeviewe...
tree
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commitdiff
2023-03-20
James Procter
JAL-4150 test and quick patch copying code from AlignFr...
tree
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commitdiff
2023-03-20
James Procter
JAL-2349 JAL-4134 Console log messages for contact...
tree
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commitdiff
2023-03-20
James Procter
JAL-4134 propagate column selection changes in tree...
tree
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commitdiff
2023-03-20
James Procter
JAL-4134 fix off-by-one in selection
tree
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commitdiff
2023-03-20
James Procter
JAL-4134 fix NPEs when matrix not resolved or alignment...
tree
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commitdiff
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