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[jalview.git] / src / jalview / io /
2006-03-13 jprocterfixes bug 0013013 but reveals lack of a 'features retri... tree | commitdiff
2006-03-08 amwaterhouseAble to read resources from Zip file tree | commitdiff
2006-02-24 amwaterhouseP1 changed to N1 tree | commitdiff
2006-02-24 amwaterhouseUse add feature instead of replacing existing values tree | commitdiff
2006-02-15 amwaterhouseSetThreshold replaces addGraphLine tree | commitdiff
2006-02-08 amwaterhouseReport invalid chars tree | commitdiff
2006-02-03 amwaterhouseJava 1.1 compatible tree | commitdiff
2006-02-03 amwaterhouseMany changes tree | commitdiff
2006-01-30 amwaterhouseNew files tree | commitdiff
2006-01-12 jprocterPIR file IO now preserves and parses Modeller style... tree | commitdiff
2005-12-16 jprocterTodo notes for feature issue: 0011711 tree | commitdiff
2005-12-12 amwaterhouseChange title tree | commitdiff
2005-12-12 amwaterhouseDont bother with WSWUBlast for now tree | commitdiff
2005-12-08 amwaterhouseUnknownSequences.remove moved out of loop tree | commitdiff
2005-12-06 amwaterhouseafter merge tree | commitdiff
2005-11-18 jprocterFixed bug dragonfly.compbio.dundee.ac.uk/mantis/view... tree | commitdiff
2005-10-07 amwaterhouseQuick fix for reading sequence tree | commitdiff
2005-10-05 amwaterhouseSequence start end added for the time being tree | commitdiff
2005-09-30 amwaterhouseRemove redundancy in Eclipse tree | commitdiff
2005-09-22 amwaterhouseCreate instance of FormatAdapter tree | commitdiff
2005-09-22 amwaterhouseWrap alignment with annotations tree | commitdiff
2005-09-22 amwaterhouseCheck if filefilter is null tree | commitdiff
2005-09-15 amwaterhouseUse equalsIgnoreCase tree | commitdiff
2005-09-12 amwaterhouseAlways return true for directories tree | commitdiff
2005-09-01 amwaterhouseAdd header to file tree | commitdiff
2005-08-23 amwaterhouseSleep for longer tree | commitdiff
2005-08-23 amwaterhouseFinalize formats tree | commitdiff
2005-08-23 amwaterhouseRegex should not be static in file loader tree | commitdiff
2005-08-23 amwaterhouseIs fileChooser instanceof Basic tree | commitdiff
2005-08-22 jprocterfixed hanging on job finished bug. tree | commitdiff
2005-08-18 amwaterhouseReturn if UNIPROT_CACHE is null tree | commitdiff
2005-08-17 amwaterhouseNo basicDirectoryModel on the Mac tree | commitdiff
2005-08-17 amwaterhouseError reply is kept separate from file type tree | commitdiff
2005-08-17 amwaterhousePut basic file chooser test in try catch loop tree | commitdiff
2005-08-16 amwaterhouseRemove redundant imports tree | commitdiff
2005-08-15 amwaterhouseUse default fileChooser for now tree | commitdiff
2005-08-09 amwaterhouseCache.getDefault tree | commitdiff
2005-08-09 amwaterhouseTry/catch loading default icons tree | commitdiff
2005-08-03 amwaterhouse1 & -1 tree | commitdiff
2005-08-03 amwaterhouseFileLoading removed from desktop tree | commitdiff
2005-07-29 amwaterhouseuse 1 & -1 if start/end not specified tree | commitdiff
2005-07-11 amwaterhousethis.installIcons tree | commitdiff
2005-07-06 amwaterhouseSequence to Uppercase before checksum tree | commitdiff
2005-06-30 amwaterhouseFormatting changes tree | commitdiff
2005-06-16 amwaterhousedont convert to uppercase tree | commitdiff
2005-06-15 amwaterhouseuse .jalview.uniprot.xml tree | commitdiff
2005-06-14 amwaterhousechange name of uniprot file tree | commitdiff
2005-06-14 jprocterArbitrary decision to keep friendly id name when readin... tree | commitdiff
2005-06-13 amwaterhouseuses paintrefresher tree | commitdiff
2005-06-10 amwaterhouseremove imports tree | commitdiff
2005-06-08 amwaterhouseif missing forward slash tree | commitdiff
2005-06-08 amwaterhouseFormatted source tree | commitdiff
2005-06-08 amwaterhouseGPL license added tree | commitdiff
2005-06-02 amwaterhouseWarn if URL not found tree | commitdiff
2005-05-30 jproctermore robust parsing for DBset/DBname|id1|id2 type ids tree | commitdiff
2005-05-27 amwaterhouseignores blank lines read in and write out tree | commitdiff
2005-05-27 jprocterbetter recognition of MSF files. tree | commitdiff
2005-05-27 amwaterhouseCut and paste changes tree | commitdiff
2005-05-27 amwaterhouseC&P changes tree | commitdiff
2005-05-27 jprocterAdded nicer header formatting for MSFfile output. tree | commitdiff
2005-05-27 jprocterResponse to bug mantis?id=8187 - some quick hacks to... tree | commitdiff
2005-05-27 jprocterOld MSF Format writer now renamed. tree | commitdiff
2005-05-26 jprocterfairly pointless catch exception error information... tree | commitdiff
2005-05-25 amwaterhousec&p changed tree | commitdiff
2005-05-25 amwaterhouseuse getHexString in util tree | commitdiff
2005-05-25 jprocterdoh - compile before commit! tree | commitdiff
2005-05-25 jproctertidied up system.out messages and moved many to stderr. tree | commitdiff
2005-05-24 amwaterhousefilefilter might not be JalviewFileFilter tree | commitdiff
2005-05-24 amwaterhouseequalsIgnoreCase tree | commitdiff
2005-05-23 jprocterbug fix for wierdness retrieving QUERY sequence index. tree | commitdiff
2005-05-20 amwaterhouseFasta FASTA tree | commitdiff
2005-05-19 amwaterhousefilechooser has multiple filters tree | commitdiff
2005-05-05 jprocter<No Comment Entered> tree | commitdiff
2005-05-05 amwaterhousenew place for sequencefeaturefetcher tree | commitdiff
2005-05-03 jprocterBetter treatment of error states and cancellability... tree | commitdiff
2005-05-03 amwaterhouseformatAdapter.formats, remove redundant code tree | commitdiff
2005-05-03 amwaterhouseRemoved as obfuscation of classes wiill change class... tree | commitdiff
2005-04-14 amwaterhousecomment out jnetpropb, h and c tree | commitdiff
2005-04-14 amwaterhouseuse webservice info tree | commitdiff
2005-04-13 amwaterhouseuse AlignFrame.NEW_WINDOW_WIDTH tree | commitdiff
2005-04-11 jprocterFixed the job-failed message. tree | commitdiff
2005-04-08 amwaterhousereads fasta files from uniprot web page tree | commitdiff
2005-04-06 jprocternext version of Jpred functionality using new client... tree | commitdiff
2005-04-01 amwaterhouseignore jnetconf tree | commitdiff
2005-04-01 amwaterhouseparses jpredfile into new alignment annotation tree | commitdiff
2005-03-31 jprocterdoh - stupid jim. tree | commitdiff
2005-03-31 jprocterAdded a flag to control if the "/<seq_start>-<seq_end... tree | commitdiff
2005-03-30 jprocterFixed a sensible default leaf distance (for files where... tree | commitdiff
2005-03-23 amwaterhousereads MSF files even if PILEUP is missing tree | commitdiff
2005-03-23 amwaterhouseoverride showSaveDialog to prompt user if file exists tree | commitdiff
2005-03-22 amwaterhouseread start end if available tree | commitdiff
2005-03-21 amwaterhouseidentifies more varied blc files tree | commitdiff
2005-03-21 amwaterhouseblc file reader modified tree | commitdiff
2005-03-18 amwaterhousedelete postscript output!! tree | commitdiff
2005-03-18 jprocterTree io modifications, including support for polytomous... tree | commitdiff
2005-03-18 amwaterhouseremove unused constants tree | commitdiff
2005-03-18 amwaterhouseuse new file filter tree | commitdiff
2005-03-18 amwaterhousealign suffix updated tree | commitdiff
2005-03-18 amwaterhouseacknowledge source and modify to take filter tree | commitdiff
2005-03-18 amwaterhousenew class tree | commitdiff
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