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JAL-966 SearchResultsI now on viewmodels.AlignmentViewport rather than on SeqCanvas
[jalview.git]
/
src
/
jalview
/
io
/
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-653_gffalignments
features/JAL-653_gffalignments
tree
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commitdiff
2015-06-17
Jim Procter
Merge branch 'develop' into features/JAL-1780_export...
tree
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commitdiff
2015-06-17
tcofoegbu
JAL-1780 more support for export setting for flatfile...
features/JAL-1780_export-settings_flatfile
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 FileLoader javadoc
tree
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commitdiff
2015-06-15
Jim Procter
JAL-1775 fix regression from commit 70f9c4700f20a8fa57e...
tree
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commitdiff
2015-06-15
tcofoegbu
JAL-1641 clean up
tree
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commitdiff
2015-06-15
tcofoegbu
clean up
tree
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commitdiff
2015-06-12
tcofoegbu
JAL-1641 refactor
tree
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commitdiff
2015-06-11
Jim Procter
JAL-653 tidy comments
tree
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commitdiff
2015-06-10
tcofoegbu
updated build.xml
tree
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commitdiff
2015-06-10
tcofoegbu
JAL-1641 updated applet version
tree
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commitdiff
2015-06-09
tcofoegbu
JAL-1488 bug-fix for incorrect start/end position in...
tree
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commitdiff
2015-06-07
Jim Procter
JAL-429 remove pointless code from phylip parser
features/JAL-653_rebased_gffalignments
tree
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commitdiff
2015-06-07
Jim Procter
JAL-653 GFF recognition for identifyFile and format...
tree
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commitdiff
2015-06-07
Jim Procter
JAL-653 basic GFF3 alignment import wrapper class
tree
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commitdiff
2015-06-06
Jim Procter
JAL-653 make sure dummy sequences created during GFF...
tree
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commitdiff
2015-06-06
Jim Procter
JAL-653 first stab at parsing GFF3 pragmas to support...
tree
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commitdiff
2015-06-06
Jim Procter
JAL-653 gff version number field
tree
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commitdiff
2015-06-05
tcofoegbu
JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 set the warningMessage for the file source...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 GFF attributes parsing mechanism, with first...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 trim initial tab in sequence feature ATTRIBUTES
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 allow dummy sequences to be created if a sequen...
tree
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commitdiff
2015-06-05
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-06-05
Jim Procter
JAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
tree
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commitdiff
2015-06-04
tcofoegbu
JAL-1756 bug-fix
tree
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commitdiff
2015-06-04
tcofoegbu
JAL-1641 updated json schema to make it more generic...
tree
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commitdiff
2015-06-02
tcofoegbu
JAL-1641 applet build fix
tree
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commitdiff
2015-06-01
tcofoegbu
JAL-1641 remove all refs/imports from gui package
tree
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commitdiff
2015-05-27
tcofoegbu
Merge branch 'features/JAL-1740_Decoup-BioJS' into...
tree
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commitdiff
2015-05-27
tcofoegbu
JAL-1740 updated synch codes to use a git repo rather...
features/JAL-1740_Decoup-BioJS
tree
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commitdiff
2015-05-25
tcofoegbu
build fix
tree
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commitdiff
2015-05-21
tcofoegbu
JAL-1740 implemented auto-update of BioJsMSA, introduce...
features/JAL-1740_BioJsAutoUpdater
tree
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commitdiff
2015-05-20
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-20
tcofoegbu
JAL-1541 minor code clean up, and added test for BioJsH...
tree
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commitdiff
2015-05-19
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
tree
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commitdiff
2015-05-19
tcofoegbu
JAL-1541 Modified BioJs exporter to take advantage...
tree
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commitdiff
2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
tree
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commitdiff
2015-05-13
tcofoegbu
Fixed some broken tests
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
tree
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commitdiff
2015-05-12
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-12
tcofoegbu
JAL_1641 added unit test and minor house keeping
tree
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commitdiff
2015-05-11
tcofoegbu
Merge branch 'features/JAL-1641_JSON_' into develop
tree
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commitdiff
2015-05-11
tcofoegbu
JAL-1641 cherry-picked changes into develop compatible...
tree
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commitdiff
2015-05-09
unknown
JAL-1601 bugfix on previous commit
tree
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commitdiff
2015-05-09
unknown
JAL-1601 patch burial display for prediction loaded...
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-05-07
Jim Procter
JAL-1601 migrated the JABAWS 2.1 jpred burial represent...
tree
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commitdiff
2015-03-27
tcofoegbu
merge commit
tree
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commitdiff
2015-03-26
gmungoc
Merge develop to Release_2_8_3_Branch
tree
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commitdiff
2015-03-06
Jim Procter
JAL-1683 replace year/version strings with tokens in...
tree
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commitdiff
2015-03-06
Jim Procter
reassign features already created/documented for 2...
tree
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commitdiff
2015-03-06
Jim Procter
Merge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e...
tree
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commitdiff
2015-02-19
gmungoc
JAL-1665 refactored Sequence.getSequenceFeatures
features/sequenceFeatureRefactor
tree
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commitdiff
2015-02-05
Charles Ofoegbu
merge commit
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 modified jalviewFileChooser to retain default...
tree
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commitdiff
2015-02-04
Charles Ofoegbu
JAL-1643 Modified JalviewFileChooser to have a more...
tree
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commitdiff
2015-01-26
gmungoc
Merge branch 'features/JAL-1588saveChimeraSession'...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1551 formatting
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1286 don't print an exception if a non-gzip stream...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 tweak signature of core annotation printer...
tree
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commitdiff
2015-01-23
Jim Procter
JAL-1628 drop getShowAnnotation accessor in favour...
tree
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commitdiff
2015-01-21
Jim Procter
Merge branch 'develop' into feature_29/JAL-1372_referen...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 employ new AnnotationFile reader method to...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 new entry point for reading annotation files...
tree
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commitdiff
2015-01-18
Jim Procter
JAL-1628 formatting and javadoc
tree
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commitdiff
2015-01-14
gmungoc
JAL-1629 .jar option removed from Alignment File Save...
tree
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commitdiff
2015-01-07
Jim Procter
Merge branch 'develop' into JAL-1483_29dev
tree
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commitdiff
2015-01-07
gmungoc
JAL-1588 refactoring to StructureViewerBase and related
tree
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commitdiff
2014-12-22
Charles Ofoegbu
Patch to synchronize title svg and allignment svg scrolling
tree
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commitdiff
2014-12-22
Jim Procter
Merge: 497958b 68dcaa7
tree
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commitdiff
2014-12-15
Charles Ofoegbu
update HtmlSvgOutput to ignore browser invocation when...
tree
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commitdiff
2014-12-15
Charles Ofoegbu
update HtmlSvgOutput to ignore browser invocation when...
features/JAL-1605_html-svg-export
tree
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commitdiff
2014-12-15
Jim Procter
JAL-1620 version bump and release notes
tree
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commitdiff
2014-12-08
Charles Ofoegbu
merge commit
tree
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commitdiff
2014-12-05
Charles Ofoegbu
Merge branch 'features/JAL-1605_html-svg-export' into...
tree
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 added command line support for html export...
tree
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commitdiff
2014-12-05
Charles Ofoegbu
modified html css
tree
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commitdiff
2014-12-05
Charles Ofoegbu
JAL-1605 merge commit
tree
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commitdiff
2014-12-05
Charles Ofoegbu
Change the Html export to utilize svg
tree
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commitdiff
2014-12-01
Jim Procter
JAL-1199 JAL-1569 incremental patch allow non-standard...
tree
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commitdiff
2014-11-26
Jim Procter
Merge branch 'JAL-674_fixannotlabels' into develop
tree
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commitdiff
2014-11-26
Jim Procter
JAL-674 make RNAML-extracted secondary structure lines...
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into develop
tree
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commitdiff
2014-11-23
Jim Procter
Merge branch 'JAL-1569_wuss_vienna_broke' into Release_...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 consistent handling of sequence and alignment...
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-23
Jim Procter
JAL-1569 preserve input ordering for stockholm files...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-674 add RNA sequence associated annotation to align...
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1569 formatting
tree
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commitdiff
2014-11-21
Jim Procter
JAL-1140 sensible name for seuqences in RNAML files...
tree
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commitdiff
2014-11-18
Jim Procter
Merge branch 'JAL-1587_promotedisorder' into develop
tree
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commitdiff
2014-11-18
Jim Procter
JAL-674 make temperature factor, local secondary struct...
tree
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commitdiff
2014-11-17
Charles Ofoegbu
comand line support for svg generation
tree
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commitdiff
2014-11-14
Charles Ofoegbu
House keeping
tree
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commitdiff
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Excluded HtmlFile.java dependencies from AppletFomatAdapter
tree
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commitdiff
2014-11-12
Charles Ofoegbu
Modified biojs exporter/importer to preserve SequenceFe...
tree
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commitdiff
2014-11-07
Charles Ofoegbu
Modified BioJsHTMLOutput.java to clean up and close...
tree
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commitdiff
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