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JAL-3253-applet JAL-3397 JAL-3383 fast IntervalStore for JavaScript
[jalview.git] / src / jalview / io /
2018-10-29 gmungocJAL-3038 add ActionListener and FocusListener to SwingJ... tree | commitdiff
2018-10-25 Ben SoaresJAL-3141 Ostensibly all backups working for alignment... tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-24 Ben SoaresJAL-3141 Code checkout. Not compiling. tree | commitdiff
2018-10-23 Ben SoaresBackupFilter and other unfinished business tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Taken the backing up code out of FileChooser... tree | commitdiff
2018-10-22 Ben SoaresJAL-3141 Tidying tree | commitdiff
2018-10-19 Ben SoaresJAL-3141 Backup files being created with default suffix... tree | commitdiff
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... tree | commitdiff
2018-10-09 Jim ProcterJAL-3127 TODO - resolve reference to Viewport for group... tree | commitdiff
2018-10-04 gmungocJAL-3132 set status message when over sequence id or... tree | commitdiff
2018-09-27 gmungocJAL-2791 refactored Export Features to apply all visibi... tree | commitdiff
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... tree | commitdiff
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch tree | commitdiff
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it... tree | commitdiff
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ... tree | commitdiff
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because... tree | commitdiff
2018-09-07 Jim ProcterJAL-3106 use .jvp as default tree | commitdiff
2018-09-03 Jim ProcterMerge branch 'patch/VAqua_saveload_update_JAL-2988... tree | commitdiff
2018-08-27 hansonrJAL-3026 alignmentFrame.statusBar.setText -> .setStatus tree | commitdiff
2018-08-24 hansonrJAL-3026 GD#107,128,130,139 build-site.xml tree | commitdiff
2018-08-22 Jim ProcterJAL-2988 workaround for jalview save as dialogs - clear... tree | commitdiff
2018-08-21 hansonrmc_view references were MCview tree | commitdiff
2018-08-17 gmungocJAL-3038 unit test updates for JalviewJS workaround... tree | commitdiff
2018-08-16 gmungocJAL-3038 workaround to replace editable combobox with... tree | commitdiff
2018-08-03 Ben SoaresJAL-3061 tree | commitdiff
2018-08-02 Ben SoaresJAL-3053 tree | commitdiff
2018-07-30 bsoaresFixed bug ignoring "alpha" extended braces in RNA SS... tree | commitdiff
2018-07-23 gmungocJAL-3056 suppress menu options, and repoint Help, for... tree | commitdiff
2018-07-23 gmungocJAL-3048 all image export (alignment, tree, PCA, Jmol... tree | commitdiff
2018-07-20 gmungocJAL-3048 JalviewJS compliant use of LineartOptions... tree | commitdiff
2018-07-20 gmungocJAL-3048 revised AlignExportSettings dialog with respon... tree | commitdiff
2018-07-17 gmungocJAL-3068 LineartOptions for EPS/HTML/SVG, new preferenc... task/JAL-3068lineartDialog tree | commitdiff
2018-07-11 Jim ProcterJAL-3048 refactored export settings to bean+dialog... Jalview-BH/JAL-3048_exportSettingsrefactor tree | commitdiff
2018-07-03 hansonrMerge remote-tracking branch 'origin/Jalview-BH/JAL... tree | commitdiff
2018-07-02 hansonrJAL-3026 File...Reload working tree | commitdiff
2018-07-02 Jim ProcterJAL-3048 remove TODOs Jalview-BH/JAL-3048_dialogs tree | commitdiff
2018-07-02 Jim ProcterJAL-3048 don’t execute dialog runner after dialog shown... tree | commitdiff
2018-07-02 Jim ProcterJAL-3048 AlignFrame -> Save dialog refactored - patched... tree | commitdiff
2018-06-29 Jim ProcterJAL-3048 refactored Desktop->File->Open to use jalview... tree | commitdiff
2018-06-28 Jim ProcterJAL-3048 TODOs for refactoring JalviewFileChooser pattern tree | commitdiff
2018-06-28 hansonrFileAsBytes tree | commitdiff
2018-06-28 hansonrJAL-3032 FileChooser missing correct call to JSToolkit... tree | commitdiff
2018-06-28 hansonrJAL-3032 DND enabled; additional io changes for File... tree | commitdiff
2018-06-27 hansonrJAL-3026 FileParser for JFileChooser results as ByteArr... tree | commitdiff
2018-06-27 hansonrJAL-3032 just the changes pulled already tree | commitdiff
2018-06-27 hansonrJAL-3032 part2 local file reading by JFileChooser tree | commitdiff
2018-06-26 Jim ProcterMerge branch 'develop' into Jalview-BH/JAL-3026 tree | commitdiff
2018-06-26 Jim ProcterJAL-3042 don't allow user to change default history... tree | commitdiff
2018-06-23 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source... tree | commitdiff
2018-06-23 hansonrJAL-3026 JDesktop/JInternalFrames support + relative... tree | commitdiff
2018-06-22 gmungocJAL-3032 avoid assignments on the same line as synchronized tree | commitdiff
2018-06-22 hansonrMerge branch 'Jalview-BH/JAL-3026' of https://source... tree | commitdiff
2018-06-22 hansonrfix for no access-control-origin on jalview site tree | commitdiff
2018-06-22 gmungocJAL-3032 more informative failure message tree | commitdiff
2018-06-20 gmungocJAL-3032 simplified _LoadFileWaitTillLoaded with no... tree | commitdiff
2018-06-20 hansonrJAL-3032 FileLoader fixes for SwingJS tree | commitdiff
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2... tree | commitdiff
2018-05-24 gmungocJAL-2997 additional tests tree | commitdiff
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number... tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 ensure default is ‘parseImmediately=true’ tree | commitdiff
2018-05-07 Jim ProcterJAL-2321 isParseImmediately() allows the parse() method... tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and... tree | commitdiff
2018-01-30 gmungocJAL-2898 show 'stop_gained' variants on peptide sequences tree | commitdiff
2018-01-30 gmungocJAL-2897 generate peptide variants for synonymous codon... tree | commitdiff
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... tree | commitdiff
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2017-12-08 gmungocJAL-2843 read/write feature filters from/to Jalview... tree | commitdiff
2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest tree | commitdiff
2017-12-04 gmungocMerge branch 'spikes/mungo' into features/JAL-1793VCF tree | commitdiff
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere... tree | commitdiff
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement... tree | commitdiff
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript... tree | commitdiff
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term... tree | commitdiff
2017-12-01 gmungocJAL-2835 refactored to extract specific consequence... tree | commitdiff
2017-12-01 gmungocJAL-2835 additional sub-terms of sequence_variant added tree | commitdiff
2017-11-30 gmungocJAL-2850 improved use of htsjdk api to read contig... tree | commitdiff
2017-11-30 Jim ProcterJAL-2849 fix tree | commitdiff
2017-11-27 gmungocJAL-2850 VCFLoader refactored to load VCF to contig... tree | commitdiff
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present... tree | commitdiff
2017-11-23 gmungocJAL-2808 removed field filters; sort CSQ data by key tree | commitdiff
2017-11-15 gmungocJAL-2835 spike updated with latest tree | commitdiff
2017-11-15 gmungocJAL-2835 take all CSQ fields; catch invalid field match... tree | commitdiff
2017-11-15 gmungocJAL-2835 support filter/colour by nested attribute... tree | commitdiff
2017-11-15 gmungocJAL-2835 add filters for VCF/VEP 'fields of interest' tree | commitdiff
2017-11-13 gmungocJAL-2738 stubs for filtering VEP and VCF fields of... tree | commitdiff
2017-11-13 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-13 Jim ProcterMerge branch 'imp/JAL-2810_ftsIDtab' into develop tree | commitdiff
2017-11-13 gmungocJAL-2176 removed unused Sequence.index tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-06 gmungocJAL-2820 include attribute value used for feature colou... tree | commitdiff
2017-10-27 Jim ProcterJAL-2804 kludge method to test if last key event handle... tree | commitdiff
2017-10-27 gmungocJAL-1793 spike branch updated to latest tree | commitdiff
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
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