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JAL-3560 from JAL-3563. This commit is expected to be reverted. Just
[jalview.git]
/
src
/
jalview
/
io
/
2020-03-20
BobHanson
automated code fix
tree
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commitdiff
2020-03-20
BobHanson
comment only
tree
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commitdiff
2019-10-22
Mungo Carstairs
JAL-32423 tidying
tree
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commitdiff
2019-10-17
gmungoc
JAL-3436 save filePath from fileObject, tidy updateRece...
tree
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commitdiff
2019-10-10
gmungoc
JAL-3454 tidy comments
tree
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commitdiff
2019-10-06
hansonr
JAL-3454 file loading string-only (testNG) fails for...
tree
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commitdiff
2019-10-06
hansonr
JAL-3451 setting dimensions for AlignFrame if embedded
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commitdiff
2019-10-04
gmungoc
JAL-3253 miscellaneous tidying up before merge to JS...
tree
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commitdiff
2019-10-01
hansonr
mistakenly uploaded test version
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commitdiff
2019-10-01
hansonr
JAL-3437 issue with
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commitdiff
2019-09-30
hansonr
moving 10-poxgenomes.bbb and newer IdentifyFile.java...
tree
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commitdiff
2019-09-30
hansonr
reverting FileFormat; moving BSMLFile and related FileF...
tree
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commitdiff
2019-09-28
hansonr
JAL-3445 preliminary BSML reader
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commitdiff
2019-09-23
hansonr
JAL-3436 file...reload not working.
tree
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commitdiff
2019-08-28
hansonr
JAL-3253-applet JAL-3423
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commitdiff
2019-08-27
hansonr
JAL-3253-applet JAL-3424 headless fix for Windows
tree
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commitdiff
2019-08-06
hansonr
JAL-3383 JAL-3397 JAL-3253-applet IntervalStore options
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commitdiff
2019-07-30
hansonr
JAL-3253-applet JAL-3383
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commitdiff
2019-05-23
hansonr
Jalview-JS/JAL-3253-applet newick Regex coding error...
tree
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commitdiff
2019-05-22
hansonr
Jalview-JS/JAL-3253-applet also comments relating to...
tree
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commitdiff
2019-05-22
hansonr
Jalview-JS/JAL-3253-applet fix for original desktop...
tree
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commitdiff
2019-05-21
gmungoc
JAL-3253-applet disabling button size setting by applet...
tree
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commitdiff
2019-05-21
gmungoc
JAL-3253 code tidies and tweaks to Desktop
tree
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commitdiff
2019-05-17
hansonr
Jalview-JS/JAL-3253-applet additional static final...
tree
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commitdiff
2019-05-17
hansonr
Jalview-JS/JAL-3253-applet adding more applet parameter...
tree
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commitdiff
2019-05-15
gmungoc
JAL-3253-applet feature parameter processing fixed
tree
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commitdiff
2019-05-15
gmungoc
JAL-3253 ApplicationSingletonProvider replaces Instance
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commitdiff
2019-05-14
hansonr
JAL-3263, JAL 3264 New Transpiler fixes FunctionalInter...
tree
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commitdiff
2019-05-13
hansonr
better preferences/properties
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commitdiff
2019-05-10
hansonr
minor edits
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commitdiff
2019-05-10
hansonr
JAL-3253 FileFormats static removal
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commitdiff
2019-05-10
hansonr
JAL-3253 jalview.bin.Instance for AppCache and FeatureA...
tree
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commitdiff
2019-05-10
hansonr
JAL-3253 jalview.bin.Instance streamlining
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commitdiff
2019-05-10
hansonr
JAL-3253 jalview.bin.Instance handles all singleton...
tree
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commitdiff
2019-05-09
hansonr
JAL-3253/JAL-3258 FileLoader fix for use of file.separator
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commitdiff
2019-05-09
hansonr
JAL-3253/JAL-3257
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commitdiff
2019-05-09
hansonr
JAL-3253 preliminary static fixes for JavaScript part...
tree
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commitdiff
2019-05-08
hansonr
JAL-3253 preliminary static fixes for JavaScript
tree
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commitdiff
2019-04-18
hansonr
explicit Hashtable objects
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commitdiff
2019-04-17
gmungoc
JAL-3026 fix bug loading Jalview Project (in Java)
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on 3 more main methods
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commitdiff
2019-04-04
gmungoc
JAL-3220 j2sIgnore on main methods on test / utility...
tree
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commitdiff
2019-04-03
hansonr
replacing @j2sNative with @j2sIgnore where appropriate...
tree
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commitdiff
2019-04-03
hansonr
j2sNative clean-up. Fixes problem with second try of...
tree
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commitdiff
2019-03-27
hansonr
consolidation of Platform isJS calls
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commitdiff
2019-03-27
hansonr
isJS cleanup
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commitdiff
2019-03-27
hansonr
clean-up of isJS business for (temporarily) noneditable...
tree
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commitdiff
2019-03-14
gmungoc
JAL-3210 JAL-3141 JAL-3056 disable backups in JalviewJS
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commitdiff
2019-03-13
gmungoc
JAL-3210 merge conflict tidying
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commitdiff
2019-03-13
gmungoc
Merge branch 'develop' into trialMerge
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commitdiff
2019-03-11
gmungoc
Merge branch 'feature/JAL-3127_seqidChainshading' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'bug/JAL-2791exportFilteredFeature' into...
tree
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commitdiff
2019-03-01
gmungoc
Merge branch 'feature/JAL-3093wrappedModeTooltips'...
tree
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commitdiff
2019-02-28
gmungoc
Merge branch 'feature/JAL-3169cancelOverwrite' into...
tree
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commitdiff
2019-02-28
gmungoc
Merge remote-tracking branch 'origin/feature/JAL-3141_b...
tree
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commitdiff
2019-02-28
Jim Procter
Merge branch 'feature/JAL-3141_backupfiles_for211'...
merge/develop_feature/JAL-3141_backupfiles_for211
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commitdiff
2019-02-22
gmungoc
JAL-2738 don't set AF as feature score
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commitdiff
2019-02-22
Ben Soares
JAL-3141 improved message for asking whether to delete...
tree
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commitdiff
2019-02-21
Ben Soares
JAL-3141 Sensible refactoring for confirming deleting...
tree
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commitdiff
2019-02-17
Ben Soares
JAL-3141 User warning when deleting old backup files...
tree
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commitdiff
2019-02-15
Ben Soares
JAL-3141 re-order deletion of old files and check lastM...
tree
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commitdiff
2019-02-14
Ben Soares
JAL-3141 Added warning/confirmation when suffixReverse...
tree
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commitdiff
2019-02-04
hansonr
SequenceFetcher JvCacheableInputBox isJS test
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commitdiff
2019-02-04
hansonr
refactoring for DBMODList
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commitdiff
2019-02-04
hansonr
adds protype size to JTextArea hack for nonexistent...
tree
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commitdiff
2019-02-04
hansonr
fixing array processing order
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commitdiff
2019-02-01
Ben Soares
JAL-3141 Slight efficiency gain in detecting backupfile...
tree
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commitdiff
2019-01-30
Ben Soares
JAL-3141 Enabled the 'Include backpup files' checkbox...
tree
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commitdiff
2019-01-29
hansonr
JSON writing fix, JColorChooser (mnemonic change) fix
tree
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commitdiff
2019-01-29
Ben Soares
JAL-3141 Found a good fix for updating the FileChooser...
tree
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commitdiff
2019-01-29
Ben Soares
JAL-3141 Found a (not ideal) fix for updating the FileC...
tree
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commitdiff
2019-01-28
Ben Soares
JAL-3141 improvement on BackupFilenameParts filename...
tree
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commitdiff
2019-01-26
hansonr
Jalview.isJS() --> Platform.isJS(), DBRefEntry[] -...
tree
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commitdiff
2019-01-25
Ben Soares
JAL-3141. This adds quite a lot of code to allow an...
tree
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commitdiff
2019-01-25
hansonr
JSON refactoring
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commitdiff
2019-01-24
Ben Soares
JAL-3141 New layout and wording of Backups Preferences...
tree
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commitdiff
2019-01-24
Ben Soares
JAL-3141 Reformatted code in eclipse
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commitdiff
2019-01-23
Ben Soares
JAL-3141 Added Presets options in the Backups Preferenc...
tree
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commitdiff
2019-01-22
Ben Soares
JAL-3141 Fixed what happens when suffix template has...
tree
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commitdiff
2019-01-21
hansonr
isAMac() -> isAMacAndNotJS(), isWindows() -> isWindowsA...
tree
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commitdiff
2019-01-20
Ben Soares
JAL-3141 removing diagnostic output
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commitdiff
2019-01-20
Ben Soares
JAL-3141 Changed suffix position to after the extension...
tree
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commitdiff
2019-01-18
Jim Procter
Merge branch 'feature/JAL-3063jaxbNoCastor' into featur...
tree
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commitdiff
2019-01-14
Ben Soares
JAL-3141 Made more constants
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commitdiff
2019-01-09
Ben Soares
JAL-3141 removed redundant method to tests
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commitdiff
2019-01-09
Ben Soares
JAL-3141 forgot to add this file after extracting the...
tree
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commitdiff
2019-01-09
Ben Soares
JAL-3141 Made one more suggested change from code review
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some more suggested changes from code...
tree
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commitdiff
2019-01-08
Ben Soares
JAL-3141 Made some suggested changes from code review
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commitdiff
2018-12-21
gmungoc
JAL-3032 prefer Jalview.isJS() to j2sNative
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commitdiff
2018-12-20
hansonr
JalviewFileChooser back to original; synth. ref fixed...
tree
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commitdiff
2018-12-20
hansonr
preliminary hack fix for synthetic reference issue
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commitdiff
2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
bug/JAL-2791exportFilteredFeature
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commitdiff
2018-12-18
gmungoc
JAL-3048 fix NPE in file chooser callbacks map
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commitdiff
2018-12-18
gmungoc
JAL-3048 DialogRunnerI reduced to minimal implementation
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commitdiff
2018-12-17
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into
tree
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commitdiff
2018-12-17
gmungoc
Merge branch 'feature/JAL-3169cancelOverwrite' into...
tree
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commitdiff
2018-12-17
gmungoc
JAL-3068 tidy status bar messaging
tree
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commitdiff
2018-12-17
gmungoc
Merge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into
tree
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commitdiff
2018-12-13
hansonr
SwingJS 3.2.4.05 should fix JFileChooser synthetic...
tree
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commitdiff
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