source.jalview.org Git - jalview.git/tree

drwxr-xr-x		..
-rw-r--r--	42	.cvsignore	blob \| history \| raw
-rw-r--r--	2972	AMSAFile.java	blob \| history \| raw
-rwxr-xr-x	10164	AlignFile.java	blob \| history \| raw
-rw-r--r--	1452	AlignmentFileReaderI.java	blob \| history \| raw
-rw-r--r--	1403	AlignmentFileWriterI.java	blob \| history \| raw
-rw-r--r--	4133	AlignmentProperties.java	blob \| history \| raw
-rwxr-xr-x	52063	AnnotationFile.java	blob \| history \| raw
-rwxr-xr-x	19266	AppletFormatAdapter.java	blob \| history \| raw
-rwxr-xr-x	6217	BLCFile.java	blob \| history \| raw
-rw-r--r--	972	BackupFilenameFilter.java	blob \| history \| raw
-rw-r--r--	4392	BackupFilenameParts.java	blob \| history \| raw
-rw-r--r--	23727	BackupFiles.java	blob \| history \| raw
-rw-r--r--	7980	BioJsHTMLOutput.java	blob \| history \| raw
-rwxr-xr-x	6661	ClustalFile.java	blob \| history \| raw
-rw-r--r--	1463	DBRefFile.java	blob \| history \| raw
-rw-r--r--	964	DataSourceType.java	blob \| history \| raw
-rwxr-xr-x	5072	FastaFile.java	blob \| history \| raw
-rwxr-xr-x	37665	FeaturesFile.java	blob \| history \| raw
-rw-r--r--	9746	FileFormat.java	blob \| history \| raw
-rw-r--r--	1039	FileFormatException.java	blob \| history \| raw
-rw-r--r--	2443	FileFormatI.java	blob \| history \| raw
-rw-r--r--	5038	FileFormats.java	blob \| history \| raw
-rwxr-xr-x	20754	FileLoader.java	blob \| history \| raw
-rwxr-xr-x	16681	FileParse.java	blob \| history \| raw
-rwxr-xr-x	8531	FormatAdapter.java	blob \| history \| raw
-rw-r--r--	10608	HTMLOutput.java	blob \| history \| raw
-rw-r--r--	5031	HtmlFile.java	blob \| history \| raw
-rw-r--r--	12830	HtmlSvgOutput.java	blob \| history \| raw
-rwxr-xr-x	13374	IdentifyFile.java	blob \| history \| raw
-rw-r--r--	1503	InputStreamParser.java	blob \| history \| raw
-rwxr-xr-x	11709	JPredFile.java	blob \| history \| raw
-rw-r--r--	28720	JSONFile.java	blob \| history \| raw
-rwxr-xr-x	17351	JalviewFileChooser.java	blob \| history \| raw
-rwxr-xr-x	4708	JalviewFileFilter.java	blob \| history \| raw
-rwxr-xr-x	4528	JalviewFileView.java	blob \| history \| raw
-rwxr-xr-x	8469	JnetAnnotationMaker.java	blob \| history \| raw
-rwxr-xr-x	9511	MSFfile.java	blob \| history \| raw
-rwxr-xr-x	10653	ModellerDescription.java	blob \| history \| raw
-rwxr-xr-x	29136	NewickFile.java	blob \| history \| raw
-rw-r--r--	2273	PDBFeatureSettings.java	blob \| history \| raw
-rwxr-xr-x	5087	PIRFile.java	blob \| history \| raw
-rwxr-xr-x	4360	PfamFile.java	blob \| history \| raw
-rw-r--r--	9329	PhylipFile.java	blob \| history \| raw
-rwxr-xr-x	4406	PileUpfile.java	blob \| history \| raw
-rw-r--r--	6992	RnamlFile.java	blob \| history \| raw
-rw-r--r--	12416	ScoreMatrixFile.java	blob \| history \| raw
-rw-r--r--	12934	SequenceAnnotationReport.java	blob \| history \| raw
-rw-r--r--	8803	SimpleBlastFile.java	blob \| history \| raw
-rw-r--r--	41506	StockholmFile.java	blob \| history \| raw
-rw-r--r--	13221	StructureFile.java	blob \| history \| raw
-rw-r--r--	17410	TCoffeeScoreFile.java	blob \| history \| raw
-rw-r--r--	93677	VamsasAppDatastore.java	blob \| history \| raw
-rwxr-xr-x	8345	WSWUBlastClient.java	blob \| history \| raw
drwxr-xr-x	-	cache	tree \| history
drwxr-xr-x	-	gff	tree \| history
drwxr-xr-x	-	packed	tree \| history
drwxr-xr-x	-	vamsas	tree \| history
drwxr-xr-x	-	vcf	tree \| history