source.jalview.org Git - jalview.git/history

git://source.jalview.org / jalview.git / history

2006-08-11	amwaterhouse	Make a new FeatureRenderer	tree \| commitdiff
2006-08-10	amwaterhouse	Comment out start and end refs	tree \| commitdiff
2006-07-28	amwaterhouse	output source in gff file	tree \| commitdiff
2006-07-27	amwaterhouse	remove unnecessary constructor	tree \| commitdiff
2006-07-27	amwaterhouse	Use DBRefSource.PDB	tree \| commitdiff
2006-07-26	jprocter	Ignore list created	tree \| commitdiff
2006-07-26	amwaterhouse	back to org.biojava	tree \| commitdiff
2006-07-25	amwaterhouse	jalview.biojava	tree \| commitdiff
2006-07-25	amwaterhouse	PDB format added	tree \| commitdiff
2006-07-21	amwaterhouse	Put DBRefFether in a new thread	tree \| commitdiff
2006-07-21	amwaterhouse	Remove start end for now??	tree \| commitdiff
2006-07-21	amwaterhouse	Add pdb ref	tree \| commitdiff
2006-07-21	amwaterhouse	DBRefs now array	tree \| commitdiff
2006-07-19	amwaterhouse	Make new seq[] when modifying hidden bits	tree \| commitdiff
2006-07-19	amwaterhouse	Count uniprot refs	tree \| commitdiff
2006-07-19	amwaterhouse	Use Selection group to define sequence range to fetch...	tree \| commitdiff
2006-07-18	amwaterhouse	omitHiddenColumns	tree \| commitdiff
2006-07-17	amwaterhouse	Towards an auto dbref fetcher	tree \| commitdiff
2006-07-14	amwaterhouse	Just fetch features for selected seqs	tree \| commitdiff
2006-07-13	amwaterhouse	Selected DAS sources may differ from default	tree \| commitdiff
2006-07-12	amwaterhouse	Append start and end	tree \| commitdiff
2006-07-07	amwaterhouse	Dont discard label if different to H or E	tree \| commitdiff
2006-07-07	amwaterhouse	Make 1.1 compatible	tree \| commitdiff
2006-07-07	amwaterhouse	Move position of stopLoading for 1.5 people	tree \| commitdiff
2006-07-07	amwaterhouse	make 1.1 compatible	tree \| commitdiff
2006-07-07	amwaterhouse	Dont write graph type twice	tree \| commitdiff
2006-07-07	amwaterhouse	Replaced by AnnotationFile	tree \| commitdiff
2006-06-23	amwaterhouse	Uniprot may have several accession ids	tree \| commitdiff
2006-06-23	amwaterhouse	Parse HTML links from jalview features file	tree \| commitdiff
2006-06-22	amwaterhouse	Takes AlignFrame as arg, to update progressbar	tree \| commitdiff
2006-06-22	amwaterhouse	Ye olde SequenceFeatureFetcher	tree \| commitdiff
2006-06-22	amwaterhouse	Renamed to DBRefFetcher	tree \| commitdiff
2006-06-15	amwaterhouse	Use spice-3d das1 source list for nowjalview/gui/DasSou...	tree \| commitdiff
2006-06-15	amwaterhouse	Fixed to trial registry at the moment	tree \| commitdiff
2006-06-15	amwaterhouse	Not using AxisDasRegistry	tree \| commitdiff
2006-06-15	amwaterhouse	Correction - use start and end	tree \| commitdiff
2006-06-15	amwaterhouse	Dont add start and end for the moment	tree \| commitdiff
2006-06-15	amwaterhouse	Wrap alignment moved to alignFrame	tree \| commitdiff
2006-06-14	amwaterhouse	Fileloading progressbar	tree \| commitdiff
2006-06-14	amwaterhouse	Sequence checks for duplicate features	tree \| commitdiff
2006-06-09	amwaterhouse	setAcceptAllFileFilter fixes bug on MacOSX	tree \| commitdiff
2006-06-09	amwaterhouse	Function not used	tree \| commitdiff
2006-06-09	amwaterhouse	Annotation/feature exporter	tree \| commitdiff
2006-06-08	jprocter	Introduced DbRefEntry to DasSourceCoordinateSystem...	tree \| commitdiff
2006-06-07	amwaterhouse	Wrap alignment added to preferences	tree \| commitdiff
2006-06-07	amwaterhouse	NEW FILES	tree \| commitdiff
2006-05-18	jprocter	added future method comment	tree \| commitdiff
2006-05-17	jprocter	added unofficial support for concise output parsing...	tree \| commitdiff
2006-05-17	jprocter	Refactored code for creating annotation objects from...	tree \| commitdiff
2006-05-15	amwaterhouse	All or nothing drawing display char	tree \| commitdiff
2006-05-12	amwaterhouse	pass viewport to fileloader, as we need to fireproperty...	tree \| commitdiff
2006-05-11	amwaterhouse	Slightly smaller recent panel	tree \| commitdiff
2006-05-11	amwaterhouse	Recently loaded files, urls, append sequences to Alignment	tree \| commitdiff
2006-05-10	amwaterhouse	Annotations must createSequenceMapping if seqRef not...	tree \| commitdiff
2006-04-10	amwaterhouse	Fixed protein desc bug	tree \| commitdiff
2006-04-07	amwaterhouse	ModellerOutput set in preferences	tree \| commitdiff
2006-04-04	amwaterhouse	Jalview2XML does not use static load	tree \| commitdiff
2006-04-04	amwaterhouse	Specify com.stevesoft.pat.Regex	tree \| commitdiff
2006-03-24	amwaterhouse	Trim line	tree \| commitdiff
2006-03-24	amwaterhouse	Features added to group Uniprot	tree \| commitdiff
2006-03-13	jprocter	fixes bug 0013013 but reveals lack of a 'features retri...	tree \| commitdiff
2006-03-08	amwaterhouse	Able to read resources from Zip file	tree \| commitdiff
2006-02-24	amwaterhouse	P1 changed to N1	tree \| commitdiff
2006-02-24	amwaterhouse	Use add feature instead of replacing existing values	tree \| commitdiff
2006-02-15	amwaterhouse	SetThreshold replaces addGraphLine	tree \| commitdiff
2006-02-08	amwaterhouse	Report invalid chars	tree \| commitdiff
2006-02-03	amwaterhouse	Java 1.1 compatible	tree \| commitdiff
2006-02-03	amwaterhouse	Many changes	tree \| commitdiff
2006-01-30	amwaterhouse	New files	tree \| commitdiff
2006-01-12	jprocter	PIR file IO now preserves and parses Modeller style...	tree \| commitdiff
2005-12-16	jprocter	Todo notes for feature issue: 0011711	tree \| commitdiff
2005-12-12	amwaterhouse	Change title	tree \| commitdiff
2005-12-12	amwaterhouse	Dont bother with WSWUBlast for now	tree \| commitdiff
2005-12-08	amwaterhouse	UnknownSequences.remove moved out of loop	tree \| commitdiff
2005-12-06	amwaterhouse	after merge	tree \| commitdiff
2005-11-18	jprocter	Fixed bug dragonfly.compbio.dundee.ac.uk/mantis/view...	tree \| commitdiff
2005-10-07	amwaterhouse	Quick fix for reading sequence	tree \| commitdiff
2005-10-05	amwaterhouse	Sequence start end added for the time being	tree \| commitdiff
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	tree \| commitdiff
2005-09-22	amwaterhouse	Create instance of FormatAdapter	tree \| commitdiff
2005-09-22	amwaterhouse	Wrap alignment with annotations	tree \| commitdiff
2005-09-22	amwaterhouse	Check if filefilter is null	tree \| commitdiff
2005-09-15	amwaterhouse	Use equalsIgnoreCase	tree \| commitdiff
2005-09-12	amwaterhouse	Always return true for directories	tree \| commitdiff
2005-09-01	amwaterhouse	Add header to file	tree \| commitdiff
2005-08-23	amwaterhouse	Sleep for longer	tree \| commitdiff
2005-08-23	amwaterhouse	Finalize formats	tree \| commitdiff
2005-08-23	amwaterhouse	Regex should not be static in file loader	tree \| commitdiff
2005-08-23	amwaterhouse	Is fileChooser instanceof Basic	tree \| commitdiff
2005-08-22	jprocter	fixed hanging on job finished bug.	tree \| commitdiff
2005-08-18	amwaterhouse	Return if UNIPROT_CACHE is null	tree \| commitdiff
2005-08-17	amwaterhouse	No basicDirectoryModel on the Mac	tree \| commitdiff
2005-08-17	amwaterhouse	Error reply is kept separate from file type	tree \| commitdiff
2005-08-17	amwaterhouse	Put basic file chooser test in try catch loop	tree \| commitdiff
2005-08-16	amwaterhouse	Remove redundant imports	tree \| commitdiff
2005-08-15	amwaterhouse	Use default fileChooser for now	tree \| commitdiff
2005-08-09	amwaterhouse	Cache.getDefault	tree \| commitdiff
2005-08-09	amwaterhouse	Try/catch loading default icons	tree \| commitdiff
2005-08-03	amwaterhouse	1 & -1	tree \| commitdiff
2005-08-03	amwaterhouse	FileLoading removed from desktop	tree \| commitdiff
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