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JAL-1516 Annotation row score output script for jalview-discuss request from David...
[jalview.git] / src / jalview / io /
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from... tree | commitdiff
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashta... tree | commitdiff
2012-05-24 jprocterJAL-1065 per sequence and per-alignment scores added... tree | commitdiff
2012-05-24 jprocterJAL-1065 - ensure null entries in annotation row so... tree | commitdiff
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview... tree | commitdiff
2012-05-23 jproctertodo: blocked by JAL-1104 tree | commitdiff
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065... tree | commitdiff
2012-03-02 jprocter(JAL-1052) todo for output of RNA consensus lines tree | commitdiff
2012-03-02 jprocter(JAL-1052) basic consensus line parsing to rna structur... tree | commitdiff
2012-03-02 jprocter(JAL-1052) make RNA secondary structure string parsing... tree | commitdiff
2011-10-21 jproctertodo tree | commitdiff
2011-10-10 jprocterupdate author list in license for (JAL-826) tree | commitdiff
2011-10-04 jprocterMerge remote-tracking branch 'remotes/origin/2_5_1_rna_... tree | commitdiff
2011-09-27 jprocterapply version 2.7 copyright tree | commitdiff
2011-08-30 jprocterensure parsing errors and 'lack of data' errors are... tree | commitdiff
2011-08-19 jprocterJAL-908 JAL-701 refactored HTML escape/unescape code... tree | commitdiff
2011-07-25 janengelhardtsome print statements to test things tree | commitdiff
2011-07-25 janengelhardtJAL-878; Additional structures with a 'GR' tag in Stock... tree | commitdiff
2011-07-25 janengelhardtJAL-841; Structure trigger token in jalview.io.Alignmen... tree | commitdiff
2011-07-25 janengelhardt'Update to Covariaton color scheme' merge; JAL-580 tree | commitdiff
2011-07-25 janengelhardtStart merging of Laurens Code tree | commitdiff
2011-07-21 jprocterensure contents of hash is extended JAL-876 tree | commitdiff
2011-06-24 jprocterfix to preserve sequence numbering in MSF (JAL-847) tree | commitdiff
2011-05-17 jprocterrefactor to allow distinct StructureSelectionManager... tree | commitdiff
2011-02-17 jprocterclassCast exception - attempting to update registry... tree | commitdiff
2011-01-21 jprocterrelaxed ID matching parameter JAL-753 tree | commitdiff
2011-01-07 jproctercheck for all http protocols tree | commitdiff
2011-01-05 jprocterJAL-727 tree | commitdiff
2011-01-05 jprocterJAL-727 tree | commitdiff
2010-12-17 jprocterJAL-715 tree | commitdiff
2010-12-15 jprocterupdate modification state flag according to parsing... tree | commitdiff
2010-12-15 jproctergetters and modification state flag tree | commitdiff
2010-12-15 jproctermore accurate determination of annotation modification tree | commitdiff
2010-12-15 jprocterrefactored key calc for hash to separate function tree | commitdiff
2010-12-14 jprocter1.1 compat tree | commitdiff
2010-12-14 jprocter1.1 compat tree | commitdiff
2010-12-14 jprocteralways provide reference to hashtable so feature settin... tree | commitdiff
2010-12-14 jprocterrefactored and patched for JAL-721 tree | commitdiff
2010-12-10 jproctermime types and handler tree | commitdiff
2010-12-09 jprocterdataIn.ready() is not a test of data source validity! tree | commitdiff
2010-12-09 jprocterinitial list of mime-type bindings to jalview data... tree | commitdiff
2010-12-09 jprocterinitial implementation for JAL-718 tree | commitdiff
2010-11-14 jprocterrefactored to decouple dependencies due to FileParse... tree | commitdiff
2010-11-14 jprocterimport annotation file from datasource tree | commitdiff
2010-11-14 jprocterrefactored protocol parser and allow human readable... tree | commitdiff
2010-10-12 jprocterpatch primary issue causing JAL-664 re testing for... tree | commitdiff
2010-10-12 jprocterpatch for secondary issue in JAL-664 re parsing empty... tree | commitdiff
2010-09-23 jprocterapply jalview code style tree | commitdiff
2010-09-23 jprocterJalview 2.6 source licence tree | commitdiff
2010-09-15 jprocteradded colour by label to feature type colourspec and... tree | commitdiff
2010-08-20 jprocterwrapped code from URL retrieval tester as a function... tree | commitdiff
2010-06-14 jprocterpatch for JAL-572 tree | commitdiff
2010-06-11 jprocterstockholm added as readable format (Lauren Lui commit) tree | commitdiff
2010-06-06 jprocterpatch for JAL-542 tree | commitdiff
2010-06-03 jprocterpatch ensuring annotation is output correctly re *... tree | commitdiff
2010-06-03 jprocterpatch and error reports re JAL-554 tree | commitdiff
2010-04-30 jprocterjalview 2.5 release banner tree | commitdiff
2010-04-29 jprocterisAligned assertion (bug 0008144) tree | commitdiff
2010-04-28 jproctergroup/annotation association tree | commitdiff
2010-04-23 jprocterskips any annotation that appears to be identical to... tree | commitdiff
2010-04-23 jprocternext attempt for Bug #36198 - appears to work reproducibly tree | commitdiff
2010-04-22 jprocternon-positional feature export in gff and features file... tree | commitdiff
2010-04-16 jprocterpatch for bug #36198 - more to follow on Monday. tree | commitdiff
2010-04-05 jprocterjavadoc, and unimplemented warning for group associated... tree | commitdiff
2010-03-26 jproctertodo for graduated feature colours tree | commitdiff
2010-03-22 jprocterSee note in Mantis bug #55537 : inconsistency between... tree | commitdiff
2010-03-18 jprocterdisabled simple blast parser for 2.4.1 release tree | commitdiff
2010-03-17 jproctersimple query anchored blast report parser (shh!) tree | commitdiff
2010-03-17 jproctersimple query anchored blast report parser (shh!) tree | commitdiff
2010-03-12 jprocter1.1 compatibility tree | commitdiff
2010-03-11 jprocternew ROWPROPERTIES statement for setting an individual... tree | commitdiff
2010-03-11 jprocterpass any warning messages to StdErr - also todo to... tree | commitdiff
2010-03-11 jprocterraise a warning if column annotation gets truncated. tree | commitdiff
2010-01-28 jprocterquick fix for very broken checkin - see Mantis bug... tree | commitdiff
2010-01-28 jproctermore rigorous annotation row content check to limit... tree | commitdiff
2009-11-06 jprocteronly append score if it is not NaN tree | commitdiff
2009-11-03 jprocterpasted file contents should never be added to the recen... tree | commitdiff
2009-10-13 jprocterfix for pfam files with empty annotation or sequence... tree | commitdiff
2009-09-22 jprocterallow the display character below a graph to be explici... tree | commitdiff
2009-08-21 jprocterpir format ambiguity and todo regarding 'format overrid... tree | commitdiff
2009-07-24 jproctertodo tree | commitdiff
2009-06-24 jprocterensure annotation row height is honoured for new VAMSAS... tree | commitdiff
2009-06-19 jprocterimplementation error warning todo tree | commitdiff
2009-06-19 jprocterdebug and cyclefix for dbrefs with embedded sequences tree | commitdiff
2009-06-19 jprocterjavadoc and datastoreitem registry support for binding... tree | commitdiff
2009-06-19 jproctermore efficient synchronized methods tree | commitdiff
2009-06-12 jproctersynching of all db references and sequence features tree | commitdiff
2009-06-12 jprocterprevent dbref->map->to->datasetsequence->dbref-> type... tree | commitdiff
2009-06-12 jprocterreinstate links on features tree | commitdiff
2009-06-12 jprocterdatastore registration and class cast exception fix tree | commitdiff
2009-06-12 jprocterprevent and keep track of which objects handling elemen... tree | commitdiff
2009-06-12 jprocternumerous bugfixs (tree panel synchs) and DatastoreRegis... tree | commitdiff
2009-06-09 jprocterfix null pointer when new view created on alignment... tree | commitdiff
2009-06-08 jprocterapply gpl development license tree | commitdiff
2009-06-08 jprocterminor optimization. apply gpl development license tree | commitdiff
2009-06-01 jprocteradded graduated colourscheme support for feature file tree | commitdiff
2009-03-31 jproctertodo tree | commitdiff
2009-02-06 jproctershowUnconserved IO tree | commitdiff
2009-01-08 jprocterfix broken parsing of non-positional features in GFF... tree | commitdiff
2008-12-19 jprocteravoid null pointer exception when no features visible tree | commitdiff
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