(JAL-1052) make RNA secondary structure string parsing code accessible to Clustal...

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 3a7a739..6b60cd5 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -521,7 +521,7 @@ public class StockholmFile extends AlignFile
     }\r
   }\r
 \r
-  private AlignmentAnnotation parseAnnotationRow(Vector annotation,\r
+  protected static AlignmentAnnotation parseAnnotationRow(Vector annotation,\r
           String label, String annots)\r
   {\r
     String convert1, convert2 = null;\r
@@ -640,7 +640,7 @@ public class StockholmFile extends AlignFile
     }\r
   }\r
 \r
-  private String id2type(String id)\r
+  protected static String id2type(String id)\r
   {\r
     if (typeIds.containsKey(id))\r
     {\r