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Annotations do not extend when full alignment is adjusted
[jalview.git] / src / jalview / io /
2007-05-02 jprocterpublic debug report log message to gather any cases... tree | commitdiff
2007-05-02 amwaterhouseAMSA input set padgaps true tree | commitdiff
2007-05-01 amwaterhouseMake sure annots are alignment width tree | commitdiff
2007-04-30 jprocter'no sources selected' calls method on feature settings... tree | commitdiff
2007-04-30 jprocterparse alignment properties and add annotation rows... tree | commitdiff
2007-04-30 jprocteralignment properties and embedded newick strings can... tree | commitdiff
2007-04-27 jprocterblc header lines inserted as 'comment' alignment property tree | commitdiff
2007-04-27 jprocterparsers can generate alignment properties tree | commitdiff
2007-04-27 amwaterhouseone colour flag in annotation export tree | commitdiff
2007-04-26 jprocteruse hasScore method to test presence of score in annota... tree | commitdiff
2007-04-26 jprocterquick fix for verbose fortranesque comments in preamble... tree | commitdiff
2007-04-26 jprocterfixed bug in prefix extraction for application tree | commitdiff
2007-04-25 amwaterhouseproperties + colours tree | commitdiff
2007-04-25 amwaterhousefix recent file type bug tree | commitdiff
2007-04-25 jprocterAlignmentAnnotation: added annotation score attribute... tree | commitdiff
2007-04-23 amwaterhouseCheck displayChar is not null tree | commitdiff
2007-04-23 amwaterhouseOnly fetch refs for seelcted sequences tree | commitdiff
2007-04-20 jprocterannotation and seqs vectors are protected members for... tree | commitdiff
2007-04-18 amwaterhousedont set seqref null if index incorrect tree | commitdiff
2007-04-18 amwaterhouseadjustForAlignment on new seq ref tree | commitdiff
2007-04-18 jprocterjava 1.1 compliance tree | commitdiff
2007-04-17 jprocterbugfix. tree | commitdiff
2007-04-17 jprocteruse of suffix string (filename.blc#suffixstring) to... tree | commitdiff
2007-04-17 jprocterrefactored to allow seeks on a FileParse datasource... tree | commitdiff
2007-04-17 jprocterjavadoc tree | commitdiff
2007-04-13 amwaterhouseFeatureRenderer takes alignmentPanel tree | commitdiff
2007-04-05 amwaterhousePasted file doesnt have title and not reloadable tree | commitdiff
2007-04-05 amwaterhousecall getAllframes on desktop instance tree | commitdiff
2007-04-04 amwaterhouseflag for dasCoordSysFound added tree | commitdiff
2007-03-19 jprocterDAS features mapped to local reference frame tree | commitdiff
2007-03-19 jprocterdisambiguate jalview.datamodel.Mapping from castor... tree | commitdiff
2007-02-27 amwaterhouseUse paintAlignment tree | commitdiff
2007-02-27 amwaterhouseremove p+3 < query.length tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-02-05 amwaterhouseapplet can define groups as parameters tree | commitdiff
2007-02-02 amwaterhouseDont add group if seqs not found tree | commitdiff
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space tree | commitdiff
2007-01-30 amwaterhouseUse util toHexString tree | commitdiff
2007-01-30 amwaterhouseOutput groups in annotation file tree | commitdiff
2007-01-29 amwaterhouseSequenceGroup parsing added to annotation file tree | commitdiff
2007-01-25 amwaterhouseRemove unneccessary lines tree | commitdiff
2007-01-25 amwaterhouseOnly output visible annotations tree | commitdiff
2007-01-25 jprocterreinstating class implementation. tree | commitdiff
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences tree | commitdiff
2007-01-24 amwaterhouseExtension to fastaFile for myhits tree | commitdiff
2007-01-19 amwaterhouseNeed to know protocol to load anntotations tree | commitdiff
2007-01-18 amwaterhouseAdd the last sequence before annotations tree | commitdiff
2007-01-18 amwaterhouse1.1 enabled tree | commitdiff
2007-01-18 amwaterhouseFile Parsing returns Alignments, not Sequence[] tree | commitdiff
2007-01-18 amwaterhouseDescriptions can be added to annotations tree | commitdiff
2007-01-04 amwaterhouseReads in anything following seq id as a description tree | commitdiff
2007-01-04 amwaterhouseHEADER and ATOM must be position 0 tree | commitdiff
2006-12-21 jprocterdescription from vamsas sequence and file type change tree | commitdiff
2006-12-21 amwaterhouseremove unnecessary import tree | commitdiff
2006-12-19 amwaterhousedescription may be null tree | commitdiff
2006-12-14 amwaterhouseset sequence_ref alignment tree | commitdiff
2006-12-14 amwaterhouseAre the labels all secondary Strutures? are the display... tree | commitdiff
2006-12-11 jprocterfixed introduced bug (doh) tree | commitdiff
2006-12-11 jprocterclarified help documentation for annotation file format... tree | commitdiff
2006-12-05 amwaterhouseSequence is char [] tree | commitdiff
2006-11-30 amwaterhouseDasRegistry moved again tree | commitdiff
2006-11-28 jprocterEBI web service interface update (and SequenceFetcher... tree | commitdiff
2006-11-21 amwaterhouseMemory check on loading file tree | commitdiff
2006-11-21 amwaterhouseSet fsettings in constuctor tree | commitdiff
2006-11-20 amwaterhouseCancel added tree | commitdiff
2006-11-14 amwaterhouseSingle seq Blc file detection tree | commitdiff
2006-11-13 amwaterhouseUse j not i tree | commitdiff
2006-11-13 amwaterhouseFasta files with * read not identified as BLC tree | commitdiff
2006-11-13 amwaterhouseQuerystring made from line tokenized seq name, seq... tree | commitdiff
2006-11-09 amwaterhousealignFrame.setFileName tree | commitdiff
2006-11-06 amwaterhouseRemember fileName in alignFrame tree | commitdiff
2006-11-02 amwaterhousedasregistry is now dasregistry.org tree | commitdiff
2006-10-30 amwaterhouseAppend html tree | commitdiff
2006-10-24 amwaterhouseOnly send one call per sequence at the moment tree | commitdiff
2006-10-18 amwaterhouseWait for response from server before next sequence tree | commitdiff
2006-10-18 amwaterhouseparseDescriptionHTML tree | commitdiff
2006-10-10 amwaterhouseaaIndex replaces aaHash tree | commitdiff
2006-10-09 jprocterimported Vamsas bindings and alpha vamsas client code... tree | commitdiff
2006-10-06 jprocterAdded filter so that input to a JPred job is *solely... tree | commitdiff
2006-10-05 amwaterhouseBatchSize now 10 tree | commitdiff
2006-10-05 amwaterhouseOutOfMemoryError test tree | commitdiff
2006-10-03 amwaterhouseSend DAS requests in batches of 20 tree | commitdiff
2006-10-03 amwaterhouseDB seqs may be lower or upper case tree | commitdiff
2006-08-30 amwaterhousejnet file is 1 to 1 mapping tree | commitdiff
2006-08-29 amwaterhouseNo stacktrace tree | commitdiff
2006-08-29 amwaterhousecreateMapping alreadyMapped tree | commitdiff
2006-08-21 amwaterhouseheader updated tree | commitdiff
2006-08-21 amwaterhouseRemove system.out tree | commitdiff
2006-08-18 amwaterhouseJalview features format adds links as hrefs tree | commitdiff
2006-08-17 amwaterhouseOptionPane invokeLater tree | commitdiff
2006-08-15 amwaterhouseAcknowledgement tree | commitdiff
2006-08-15 amwaterhouseWRITEABLE_FORMATS and READABLE_FORMATS string [] tree | commitdiff
2006-08-14 amwaterhouseStockholm parser added tree | commitdiff
2006-08-14 amwaterhouseStockholm parser tree | commitdiff
2006-08-14 amwaterhouseDo a loop for multiple seq matches tree | commitdiff
2006-08-14 amwaterhouseCorrect test string tree | commitdiff
2006-08-11 amwaterhouseDesktop is null if -noDisplay is set tree | commitdiff
2006-08-11 amwaterhouseMake a new FeatureRenderer tree | commitdiff
2006-08-10 amwaterhouseComment out start and end refs tree | commitdiff
2006-07-28 amwaterhouseoutput source in gff file tree | commitdiff
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