Fasta files with * read not identified as BLC
authoramwaterhouse <Andrew Waterhouse>
Mon, 13 Nov 2006 16:11:09 +0000 (16:11 +0000)
committeramwaterhouse <Andrew Waterhouse>
Mon, 13 Nov 2006 16:11:09 +0000 (16:11 +0000)
src/jalview/io/IdentifyFile.java

index 9a248e5..024da61 100755 (executable)
@@ -122,10 +122,16 @@ public class IdentifyFile
                     // could be BLC file, read next line to confirm\r
                     data = reader.readLine();\r
 \r
-                    if (data.indexOf(">") > -1 || data.indexOf("*") >-1 )\r
+                    if (data.indexOf(">") > -1)\r
                     {\r
                         reply = "BLC";\r
                     }\r
+                    //Is this a single line BLC file?\r
+                    data = reader.readLine();\r
+                    if(data!=null && data.length()==1)\r
+                    {\r
+                      reply = "BLC";\r
+                    }\r
                     else\r
                     {\r
                         reply = "FASTA";\r