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JAL-3070 use ArgumentI in all public constructors, convert to service specific argume...
[jalview.git]
/
src
/
jalview
/
jbgui
/
2018-07-23
Jim Procter
Merge branch 'features/mchmmer' into merge/wsinterfaces...
tree
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commitdiff
2018-06-26
Jim Procter
JAL-3035 - jalview-das is no more !
tree
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commitdiff
2018-05-30
gmungoc
JAL-2629 suppress 'Add Database' menu option in favour...
tree
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commitdiff
2018-05-28
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-28
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2...
tree
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commitdiff
2018-05-25
gmungoc
JAL-2995 tooltip on fields with double-click to browse...
tree
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commitdiff
2018-05-22
gmungoc
JAL-2629 method refactor and menu tidying
tree
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commitdiff
2018-05-08
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
tree
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commitdiff
2018-04-19
gmungoc
JAL-591 utility method renamed and slightly generalised
tree
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commitdiff
2018-04-17
gmungoc
JAL-2629 choice of hmm profile now a parameter not...
tree
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commitdiff
2018-04-16
gmungoc
JAL-2937 use preferences for presets, simplify some...
tree
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commitdiff
2018-04-12
gmungoc
JAL-2944 tidies for review comments
tree
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commitdiff
2018-04-09
Mungo Carstairs
JAL-2937 Cygwin path preference, method refactoring
tree
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commitdiff
2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
tree
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commitdiff
2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
tree
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commitdiff
2018-04-05
Jim Procter
JAL-2944 combo box to pick which viewer to load structu...
tree
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commitdiff
2018-03-30
gmungoc
JAL-2629 combine with/without defaults in one method...
tree
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commitdiff
2018-03-26
gmungoc
JAL-2939 unused action handler methods removed
tree
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commitdiff
2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
tree
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commitdiff
2018-02-19
gmungoc
JAL-2629 refactoring of Hmmer preferences
tree
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commitdiff
2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
tree
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commitdiff
2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
tree
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commitdiff
2017-10-27
gmungoc
JAL-1793 spike branch updated to latest
tree
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commitdiff
2017-10-26
gmungoc
JAL-2792 html table for Feature Details report
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-21
gmungoc
JAL-2738 PoC of Load VCF file on to gene sequence
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'bug/JAL-2691_nomultimermapping' into...
tree
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commitdiff
2017-08-31
kiramt
JAL-2527 Updated Spanish, adjusted UI so Spanish fits
tree
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commitdiff
2017-08-31
kiramt
JAL-2527 Updates following code review
tree
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commitdiff
2017-08-30
kiramt
JAL-2527 Added default setting/resetting and first...
tree
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commitdiff
2017-08-29
kiramt
JAL-2527 Added overview prefs - don't get picked up...
tree
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commitdiff
2017-08-28
kiramt
JAL-2527 Started adding overview preferences
tree
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commitdiff
2017-08-27
Jim Procter
JAL-2691 cached view combo box value javadoc
tree
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commitdiff
2017-08-25
TZVanaalten
JAL-2629 add ability to add and select a DB for hmmsearch
tree
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commitdiff
2017-08-25
TZVanaalten
JAL-2629 add basic parameter adjustment to hmmsearch...
tree
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commitdiff
2017-08-18
TZVanaalten
Merge branch 'develop' into features/hmmer
tree
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commitdiff
2017-08-17
TZVanaalten
JAL-2629 add documentation to previous work
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-15
TZVanaalten
JAL-2629 configure file chooser to select either a...
tree
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commitdiff
2017-08-15
TZVanaalten
JAL-2629 add HMMER version check
tree
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commitdiff
2017-08-15
TZVanaalten
JAL-2629 selected HMM name now shown in HMMER menu
tree
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commitdiff
2017-08-15
TZVanaalten
JAL-2629 the HMMER tab is now disabled when HMMER is...
tree
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commitdiff
2017-08-14
TZVanaalten
JAL-2629 remove redundant options from HMMER menu
tree
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commitdiff
2017-08-14
TZVanaalten
JAL-2629 add validation for HMMER path
tree
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commitdiff
2017-08-13
TZVanaalten
JAL-2629 add HMMER tab in preferences menu
tree
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commitdiff
2017-08-08
TZVanaalten
JAL-2629 add ability to select hmmer binaries folder
tree
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commitdiff
2017-08-04
TZVanaalten
JAL-2629 multiple HMMs can now be dropped onto an alignment
tree
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commitdiff
2017-07-31
TZVanaalten
JAL-2629 add hmmalign command
tree
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commitdiff
2017-07-27
TZVanaalten
JAL-2629 implement hmmbuild
tree
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commitdiff
2017-07-25
TZVanaalten
JAL-2629 add non-functional HMMER menu
tree
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commitdiff
2017-07-14
TZVanaalten
add partial button fix to annotation and statistics...
features/hmmer_statistics
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-05-29
tcofoegbu
JAL-1648 improvement on finder searchbox keyboard contr...
tree
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commitdiff
2017-05-29
tcofoegbu
JAL-1648 code fix - enter key should pick selected...
tree
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commitdiff
2017-05-25
Jim Procter
Merge branch 'develop' into features/JAL-1648_cache_use...
tree
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commitdiff
2017-05-17
Jim Procter
Merge branch 'features/JAL-2447experimentalFlag' into...
tree
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commitdiff
2017-05-15
Jim Procter
Merge branch 'features/JAL-2376_add-horizontal-bar...
tree
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commitdiff
2017-05-05
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-05-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-05-04
gmungoc
JAL-2504 allow feature type to be specified for Create...
tree
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commitdiff
2017-05-02
gmungoc
JAL-2447 EXPERIMENTAL preference (option in Tools menu)
features/JAL-2447experimentalFlag
tree
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commitdiff
2017-05-02
gmungoc
JAL-2499 JAL-2403 push 'configure for view' inside...
tree
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commitdiff
2017-05-01
tcofoegbu
JAL-2376 copied out patch from Phyre branch
tree
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commitdiff
2017-04-28
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-27
Jim Procter
JAL-1933 desktop preferences for occupancy
tree
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commitdiff
2017-04-24
tcofoegbu
JAL-1648 House keeping
tree
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commitdiff
2017-04-20
tcofoegbu
JAL-1648 refactored and improved caching architecture...
tree
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commitdiff
2017-04-19
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-04-10
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-10
gmungoc
JAL-2361 option to save on OK of changed named colour...
tree
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commitdiff
2017-04-07
gmungoc
JAL-2393 code tidying for review comments
tree
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commitdiff
2017-04-07
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-04-05
gmungoc
JAL-2361 apply any saved changes to current colour...
tree
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commitdiff
2017-04-03
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
tree
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commitdiff
2017-04-03
tcofoegbu
JAL-1648 Added improvement to persist cache items to...
tree
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commitdiff
2017-03-31
gmungoc
JAL-1608 unused method removed
tree
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commitdiff
2017-03-31
gmungoc
JAL-2435 slightly more sensible behaviour changing...
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into features/JAL-2435splitScree...
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-1608createGroups
bug/JAL-1608createGroups
tree
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commitdiff
2017-03-30
gmungoc
JAL-1608 leave Create Group, Remove Group menu items...
tree
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commitdiff
2017-03-30
gmungoc
Merge branch 'develop' into bug/JAL-2399textColour
bug/JAL-2399textColour
tree
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commitdiff
2017-03-29
gmungoc
Merge branch 'develop' into bug/JAL-1608createGroups
tree
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commitdiff
2017-03-23
gmungoc
Merge branch 'develop' into features/JAL-2393customMatrices
tree
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commitdiff
2017-03-08
gmungoc
JAL-2435 copy font changes across split screen
tree
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commitdiff
2017-03-07
gmungoc
JAL-2295 status messages for Chimera attributes set...
tree
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commitdiff
2017-03-02
gmungoc
JAL-2295 tweak order and wording of Superpose menu...
tree
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commitdiff
2017-03-02
gmungoc
JAL-2295 make 'Jmol' menu appear; enable/disable Superp...
tree
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commitdiff
2017-02-27
gmungoc
JAL-1632 dialog to calculate either Tree or PCA
tree
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commitdiff
2017-02-23
gmungoc
JAL-2403 JAL-1483 changes to ScoreModelI hierarchy...
tree
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commitdiff
2017-02-17
gmungoc
JAL-2416 SeqSpace PCA now provided as an alternative...
tree
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commitdiff
2017-02-13
gmungoc
JAL-1632 first cut of Tree chooser dialog and ScoreMode...
tree
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commitdiff
2017-02-09
gmungoc
JAL-1608 menu entry text; enable/disable Create/Remove...
tree
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commitdiff
2017-02-09
Jim Procter
Merge branch 'develop' into features/JAL-2316
features/JAL-2316
tree
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commitdiff
2017-02-09
gmungoc
JAL-2401 change 'Lower Case Colour' to checkbox with...
tree
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commitdiff
2017-02-08
gmungoc
JAL-2399 JAL-2400 tidy Text Colour wording, behaviour...
tree
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commitdiff
2017-02-08
kiramt
Merge remote-tracking branch 'origin/develop' into...
tree
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commitdiff
2017-02-07
Jim Procter
Merge branch 'features/JAL-2371collectionColourScheme...
tree
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commitdiff
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