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JAL-3878 update branch from 2.12 merge from 2.11.2
[jalview.git]
/
src
/
jalview
/
jbgui
/
2022-12-14
Jim Procter
Merge branch 'develop' into update_212_Dec_merge_with_2...
tree
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commitdiff
2022-12-13
Jim Procter
Merge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...
tree
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commitdiff
2022-11-21
Jim Procter
Merge commit 'alpha/update_2_12_for_2_11_2_series_merge...
tree
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commitdiff
2022-07-25
Ben Soares
JAL-4034 button looks better also on other OSes with...
tree
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commitdiff
2022-07-24
Ben Soares
JAL-4034 add round corners to 3DB confirmation button...
tree
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commitdiff
2022-07-15
Ben Soares
JAL-4034 Use the new non-modal JDialog for 3DBeacons...
tree
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commitdiff
2022-07-04
Jim Procter
JAL-4034 Fix #2 show an icon and a button to press...
tree
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commitdiff
2022-06-28
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-28
Ben Soares
JAL-1988 Don't put Quit in the File menu if there's...
tree
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commitdiff
2022-06-23
Ben Soares
Merge branch 'improvement/JAL-1988+JAL-3416_Java8_macOS...
tree
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commitdiff
2022-06-23
Ben Soares
JAL-1988 Check for setHandler capability to avoid About...
tree
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commitdiff
2022-06-17
Ben Soares
JAL-3027 Avoid FlatLAF Desktop class is JalviewJS
tree
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commitdiff
2022-06-15
Jim Procter
JAL-1988 JAL-3416 avoid unnecessary static flag
tree
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commitdiff
2022-06-15
Jim Procter
JAL-3418 JAL-1988 don’t need java version check anymore
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 Hack to ensure Quit dialog box is moved to...
tree
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commitdiff
2022-06-13
Ben Soares
JAL-1988 Moved APQHandlers to jalview.jbgui and called...
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3746 apply copyright to source
tree
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commitdiff
2022-03-08
Jim Procter
JAL-3438 spotless for 2.11.2.0
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Removed code and unused widgets for defaultBrowser
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Remove BrowserLauncher2 and use Desktop.browse...
tree
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commitdiff
2022-03-08
Ben Soares
JAL-3103 Put jalview.jar first in getdown for .properti...
tree
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commitdiff
2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
tree
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commitdiff
2022-02-11
Ben Soares
JAL-3949 Complete new abstracted logging framework...
tree
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commitdiff
2022-01-27
Jim Procter
Merge branch 'bug/JAL-3633_read_proxy_settings_from_jal...
tree
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commitdiff
2021-11-03
Jim Procter
JAL-3915 remove RNAview opts from preferences. Still...
tree
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commitdiff
2021-10-01
Jim Procter
JAL-3616 show name of structure viewer in ‘new view...
tree
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commitdiff
2021-10-01
Jim Procter
JAL-3829 fetch 3D beacons now started by clicking butto...
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 open web page for 3d beacons structure by...
features/r2_11_2/JAL-3829_3dbeacons
tree
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commitdiff
2021-09-24
Jim Procter
JAL-3829 right click to view popup menu to show link...
tree
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commitdiff
2021-09-14
Ben Soares
JAL-2422 More helpful highlighting/user guidance of...
tree
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commitdiff
2021-09-13
Jim Procter
JAL-3829 select single best TDB structure and select...
tree
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commitdiff
2021-09-11
Jim Procter
JAL-3829 patch failing tests and todo for future
tree
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commitdiff
2021-09-10
Jim Procter
JAL-3829 provide both PDBe queries and 3D-Beacons queri...
tree
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commitdiff
2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the Struct...
tree
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commitdiff
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
tree
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commitdiff
2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
tree
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commitdiff
2021-07-25
Jim Procter
JAL-3848 slivka preferences in javascript
tree
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commitdiff
2021-03-19
Ben Soares
JAL-3503 missed a widget being disabled
tree
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commitdiff
2021-03-19
Ben Soares
JAL-3503 Added a Startup tab in Preferences, with gui...
tree
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commitdiff
2021-03-05
Ben Soares
JAL-3618 Enable appBundleIsTraversable in JFileChooser...
tree
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commitdiff
2020-12-14
Jim Procter
Merge branch 'Jalview-JS/develop' into merge_js_develop
tree
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commitdiff
2020-12-11
Ben Soares
JAL-3775 JAL-3633 Make java.net.Authenticator code...
tree
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commitdiff
2020-12-11
Mateusz
JAL-3690 Let's enable web services (seriously this...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3775 Eclipse re-formatting commit
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 last minute refinement so password box doesn...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Apply (proxy) button enabled when needed
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Small changes to allow future fitting with...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3275 JAL-3633: JAL-3275 Turned Preferences into...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Set proxy preferences before web calls in...
tree
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commitdiff
2020-11-13
Ben Soares
JAL-3633 Memory only proxy auth password storage. Open...
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Added Proxy Authentication credentials in...
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Added Preferences for Proxy Authentication...
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 label.proxy_server -> label.proxy_servers
tree
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commitdiff
2020-11-12
Ben Soares
JAL-3633 Remember system set proxy properties. Add...
tree
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commitdiff
2020-08-17
Jim Procter
JAL-3490 merged with 2.11.2 develop
tree
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commitdiff
2020-07-09
Mateusz Warowny
Merge branch 'feature/JAL-3686_slivka_client_js_update...
alpha/merge_212_JalviewJS_2112
tree
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commitdiff
2020-06-30
gmungoc
JAL-3446 unused imports removed
tree
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commitdiff
2020-06-29
Jim Procter
Merge branch 'bug/JAL-3490findSpanHiddenGaps' into...
tree
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commitdiff
2020-06-29
gmungoc
JAL-3518 corrected pulled up focusView() command
tree
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commitdiff
2020-06-11
BobHanson
Merge branch 'Jalview-JS/develop.JAL-3446.ctrlDown...
tree
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commitdiff
2020-06-10
BobHanson
JAL-3446 JAL-3645 tooltip testing not intended to be...
tree
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commitdiff
2020-06-10
BobHanson
JAL-3446 from applet, JAL-3584 tooltip fixes <br> and...
tree
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commitdiff
2020-06-10
BobHanson
JAL-3446 Dynamic menu - Moves calc sortby tree item...
tree
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commitdiff
2020-06-05
BobHanson
JAL-3446 removes all JalviewJSApp dependency from jalvi...
tree
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commitdiff
2020-06-03
BobHanson
JAL-3446 from JAL-3253 ApplicationSingletonProvider...
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 test for simpler key mask operation
tree
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commitdiff
2020-06-02
BobHanson
JAL-3446 JAL-3253 Preferences
tree
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commitdiff
2020-06-02
BobHanson
JAL-3626 from JAL-3253-applet web page embedding
tree
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commitdiff
2020-05-26
gmungoc
JAL-1761 pattern for structure viewer construction...
tree
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commitdiff
2020-05-19
gmungoc
Merge branch 'develop' into feature/JAL-3551Pymol
tree
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commitdiff
2020-05-18
Jim Procter
Merge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
tree
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commitdiff
2020-05-11
gmungoc
JAL-2422 JAL-3551 viewer text/variables generalised...
tree
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commitdiff
2020-04-23
Jim Procter
Merge branch 'develop' into alpha/JAL-3362_Jalview_212_...
tree
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commitdiff
2020-03-30
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2020-03-13
gmungoc
JAL-3551 working proof of concept of Jalview driving...
tree
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commitdiff
2020-03-09
gmungoc
Merge branch 'develop' into feature/JAL-2422ChimeraX
tree
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commitdiff
2020-02-21
gmungoc
JAL-2422 tidy of methods and parameters
tree
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commitdiff
2020-02-04
MMWarowny
JAL-3515 Build a WSPreferences page for Slivka services.
tree
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commitdiff
2020-01-31
gmungoc
JAL-2422 more responsive Chimera/X path prompts in...
tree
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commitdiff
2020-01-28
gmungoc
JAL-2422 ChimeraX added to Preferences
tree
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commitdiff
2020-01-16
Jim Procter
Merge branch 'improvement/JAL-3474_lots_of_.cvsignore_f...
tree
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commitdiff
2019-12-20
Ben Soares
JAL-3473 Checked value of def and min. Set def to min...
tree
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commitdiff
2019-12-20
Ben Soares
JAL-3473 Checked value of def and min. Set def to min...
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 extract constants for number of rows in layout
tree
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commitdiff
2019-12-11
gmungoc
JAL-3490 revised layout and search algorithm (more...
tree
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commitdiff
2019-11-05
gmungoc
JAL-3210 JAL-3130 can't read java.specification.version...
tree
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commitdiff
2019-11-01
Ben Soares
JAL-3474 removed all .cvsignore files stored in the...
improvement/JAL-3474_lots_of_.cvsignore_files
tree
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commitdiff
2019-10-08
gmungoc
Merge branch 'develop' into Jalview-JS/develop
tree
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commitdiff
2019-08-23
gmungoc
JAL-3141 correct cast of spinner value
tree
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commitdiff
2019-07-16
gmungoc
JAL-3210 Merge branch 'develop' into trialMerge
tree
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commitdiff
2019-07-15
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-07-12
Thomas
JAL-2629 add sort by evalue and bit score
tree
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commitdiff
2019-07-10
Jim Procter
Merge branch 'merge/JAL-3285_mchmmer_with_211_develop...
tree
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commitdiff
2019-07-03
tva
JAL-2629 can now filter by sequence e-value or bit...
tree
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commitdiff
2019-07-02
Jim Procter
JAL-3111 JAL-3280 hide the version check preference...
tree
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commitdiff
2019-07-02
Jim Procter
Merge branch 'develop' into tasks/JAL-3311_removeVamsasMenu
tree
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commitdiff
2019-07-02
tva
JAL-2629 add simple jackhmmer functionality
tree
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commitdiff
2019-06-28
Ben Soares
JAL-3333 Replaced title text rendered in animated image...
tree
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commitdiff
2019-06-17
Jim Procter
JAL-3311 remove menus and documentation relating to...
tasks/JAL-3311_removeVamsasMenu
tree
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commitdiff
2019-06-14
Ben Soares
JAL-3295 pre-merged code with JAL-3295 branch which...
tree
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commitdiff
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