JAL-2994 put ‘\’ first in character class clause of regex - otherwise doesn’t compile...
[jalview.git] / src / jalview / renderer /
2018-04-18 gmungocMerge branch 'develop' into features/mchmmer
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead...
2018-03-20 gmungocJAL-2629 InformationThread.findOrCreateAnnotation and...
2018-03-16 gmungocMerge branch 'develop' into trialMerge
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into...
2018-03-07 gmungocJAL-2629 storage and lifecycle of alignment/group HMM...
2018-02-22 gmungocJAL-2629 tidy unit tests, constants etc
2018-02-20 gmungocMerge branch 'develop' into features/mchmmer
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence...
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC...
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-11-20 kiramtJAL-2759 reinstate change from develop (JAL-2636) someh...
2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annot... bug/JAL-2827
2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when...
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759
2017-11-07 gmungocJAL-2069 update spike branch with latest
2017-11-07 gmungocJAL-2816 tweaks to feature visibility checks
2017-11-02 gmungocJAL-2808 spike updated with latest
2017-11-02 gmungocJAL-2808 feature filters held on FeatureRenderer, getCo...
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop
2017-10-20 gmungocPush 1793 latest to spike branch
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of...
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f...
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method.
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t...
2017-09-04 Jim ProcterMerge branch 'feature/JAL-2587' into documentation...
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application...
2017-09-04 Jim ProcterMerge branch 'bug/JAL-2704gapColourFading' into documen...
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2587' into documentation...
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1...
2017-08-31 kiramtJAL-2527 Updates following code review
2017-08-31 gmungocJAL-2704 unit test for Above PID gap colour, simplified... bug/JAL-2704gapColourFading
2017-08-30 gmungocJAL-2704 don't shade gap colour for PID/conservation
2017-08-30 kiramtJAL-2527 Code comments, tidy
2017-08-30 kiramtJAL-2527 Added default setting/resetting and first...
2017-08-30 kiramtJAL-2527 Wired up cached values to overview
2017-08-30 kiramtMerge remote-tracking branch 'origin/feature/2588'...
2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527
2017-08-29 kiramtJAL-2664 Updates following review feature/JAL-2664
2017-08-28 tzvanaaltenJAL-2629 add option to set HMM Logo letter height to...
2017-08-25 kiramtJAL-2587 Removed duplicate events fired to progress bar
2017-08-25 TZVanaaltenJAL-2629 add adjustable parameters to hmmbuild
2017-08-25 kiramtJAL-2587 Update overview progress bar while drawing...
2017-08-25 kiramtJAL-2587 Progress bar sizing tweaks
2017-08-25 kiramtJAL-2587 Made progress bar display before overview...
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2609fastPaintW...
2017-08-21 Jim ProcterJAL-2588 don’t test char==gap until we know the shader... feature/2588
2017-08-21 Jim ProcterJAL-2588 field on overview colour finder for default...
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList
2017-08-18 TZVanaaltenMerge branch 'develop' into features/hmmer
2017-08-18 Jim ProcterMerge branch 'feature/2588' into merge/develop_feature...
2017-08-18 kiramtJAL-2664 Adjusted colour of hidden cols/seqs
2017-08-18 kiramtJAL-2664 Correct colouring for rows
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources
2017-08-16 Jim ProcterJAL-2418 source formatting
2017-08-14 kiramtJAL-2664 Initial change to drawing hidden regions in...
2017-08-08 kiramtJAL-2587 Added progress bar to overview. Not fully...
2017-08-04 TZVanaaltenJAL-2599 fixed information annotation buttons not working
2017-08-02 TZVanaaltenJAL-2599 fix for information annotation buttons
2017-08-01 gmungocJAL-2636 draw scale marks up to second last column
2017-07-27 TZVanaaltenJAL-2629 moved HMM storage location to placeholder...
2017-07-24 gmungocspike branch updated from latest features/JAL-2446
2017-07-23 gmungocJAL-2481 JAL-2624 test for render feature below score...
2017-07-23 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring...
2017-07-14 TZVanaaltenadd partial button fix to annotation and statistics... features/hmmer_statistics
2017-07-12 TZVanaaltentest HMM annotaTION
2017-07-12 kiramtJAL-2588 Check/fix show boxes settings + unit test...
2017-07-12 kiramtJAL-2588 Added tests
2017-07-11 TZVanaaltencomplete Information Content annotation
2017-07-11 kiramtJAL-2588 (and JAL-2610, JAL-2603) mid refactor
2017-06-30 gmungocJAL-2526 correct treatment of contact features only...
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-06-22 gmungocJAL-2481 JAL-2593 JAL-2526 further optimisation of...
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring...
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591
2017-06-09 gmungocJAL-2446 merged to spike branch
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour
2017-06-09 gmungocJAL-2593 avoid redundant rendering of co-located features
2017-06-08 kiramtJAL-2588 Consistent gap colour when in None colour...
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring
2017-06-08 kiramtJAL-2591 Made redraw flag in OverviewRenderer volatile
2017-06-08 kiramtJAL-2591 made redraw volatile
2017-06-07 kiramtJAL-2591 Overview window update interrupts
2017-06-07 kiramtJAL-2591 Increased granularity of overview panel update...
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1...
2017-05-29 gmungocJAL-2526 Sequence.findPositions to get residue position...
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList
2017-05-15 kiramtJAL-2388 Add missed optimisation
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