JAL-2827 Fix notched repaint of helix annotation when scrolling

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index 41772d4..683ca78 100644 (file)
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -1147,7 +1147,8 @@ public class AnnotationRenderer
   {
     g.setColor(HELIX_COLOUR);
 
-    int sCol = (lastSSX / charWidth) + startRes;
+    int sCol = (lastSSX / charWidth)
+            + hiddenColumns.adjustForHiddenColumns(startRes);
     int x1 = lastSSX;
     int x2 = (x * charWidth);