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Merge branch 'task/JAL-3337_gradle_tasks_sourceDist_and_help2Website' into develop
[jalview.git] / src / jalview / renderer /
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam... tree | commitdiff
2018-11-29 gmungocJAL-3140 NCList now via IntervalStore library tree | commitdiff
2018-04-18 gmungocMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-22 gmungocJAL-2929 unit test, tidy unused/unneeded fields/parameters tree | commitdiff
2018-03-21 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-03-21 gmungocJAL-2929 use configure Overview gap colour instead... tree | commitdiff
2018-03-07 Jim ProcterMerge branch 'releases/Release_2_10_4_Branch' into... tree | commitdiff
2018-02-06 kiramtMerge branch 'develop' into feature/JAL-2759 feature/JAL-2759 tree | commitdiff
2018-01-22 kiramtJAL-2579 Moved locateVisibleStartOfSequence to Sequence... tree | commitdiff
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... tree | commitdiff
2018-01-10 gmungocJAL-1793 update spike branch to latest tree | commitdiff
2017-12-05 gmungocMerge branch 'develop' into features/JAL-1793VCF tree | commitdiff
2017-11-20 kiramtJAL-2759 reinstate change from develop (JAL-2636) someh... tree | commitdiff
2017-11-10 kiramtJAL-2827 related fixes for stem and non-canonical annot... bug/JAL-2827 tree | commitdiff
2017-11-09 kiramtJAL-2827 Fix notched repaint of helix annotation when... tree | commitdiff
2017-11-08 kiramtMerge branch 'develop' into feature/JAL-2759 tree | commitdiff
2017-11-07 gmungocJAL-2069 update spike branch with latest tree | commitdiff
2017-11-07 gmungocJAL-2816 tweaks to feature visibility checks tree | commitdiff
2017-11-02 gmungocJAL-2808 spike updated with latest tree | commitdiff
2017-11-02 gmungocJAL-2808 feature filters held on FeatureRenderer, getCo... tree | commitdiff
2017-10-24 gmungocJAL-2738 update spike branch with latest tree | commitdiff
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop tree | commitdiff
2017-10-20 gmungocPush 1793 latest to spike branch tree | commitdiff
2017-10-17 Jim ProcterJAL-2481 patch to fix findFeatureColour for end-of... tree | commitdiff
2017-10-10 kiramtMerge remote-tracking branch 'origin/features/JAL-2609f... tree | commitdiff
2017-10-09 Jim ProcterJAL-2446 remove duplicate code from pulled up method. tree | commitdiff
2017-10-04 kiramtJAL-2674 more adjustments to locateVisibleBoundsOfSequence tree | commitdiff
2017-10-04 kiramtJAL-2674 Simplify locateVisibleBoundsOfSequence tree | commitdiff
2017-10-03 gmungocJAL-2738 copy to spikes/mungo tree | commitdiff
2017-09-20 kiramtJAL-2674 fix up interface of locateVisibleBoundsOfSequence tree | commitdiff
2017-09-05 Jim ProcterMerge branch 'master' into portforward/JAL-2675_2102b1t... tree | commitdiff
2017-09-04 Jim ProcterMerge branch 'feature/JAL-2587' into documentation... tree | commitdiff
2017-09-04 Jim ProcterJAL-2527 move default colours for applet / application... tree | commitdiff
2017-09-04 Jim ProcterMerge branch 'bug/JAL-2704gapColourFading' into documen... tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'feature/JAL-2587' into documentation... tree | commitdiff
2017-09-03 Jim ProcterMerge branch 'documentation/JAL-2675_release2102b1... tree | commitdiff
2017-08-31 kiramtJAL-2527 Updates following code review tree | commitdiff
2017-08-31 gmungocJAL-2704 unit test for Above PID gap colour, simplified... bug/JAL-2704gapColourFading tree | commitdiff
2017-08-30 gmungocJAL-2704 don't shade gap colour for PID/conservation tree | commitdiff
2017-08-30 kiramtJAL-2527 Code comments, tidy tree | commitdiff
2017-08-30 kiramtJAL-2527 Added default setting/resetting and first... tree | commitdiff
2017-08-30 kiramtJAL-2527 Wired up cached values to overview tree | commitdiff
2017-08-30 kiramtMerge remote-tracking branch 'origin/feature/2588'... tree | commitdiff
2017-08-30 kiramtMerge branch 'feature/JAL-2664' into feature/JAL-2527 tree | commitdiff
2017-08-29 kiramtJAL-2664 Updates following review feature/JAL-2664 tree | commitdiff
2017-08-25 kiramtJAL-2587 Removed duplicate events fired to progress bar tree | commitdiff
2017-08-25 kiramtJAL-2587 Update overview progress bar while drawing... tree | commitdiff
2017-08-25 kiramtJAL-2587 Progress bar sizing tweaks tree | commitdiff
2017-08-25 kiramtJAL-2587 Made progress bar display before overview... tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2609fastPaintW... tree | commitdiff
2017-08-21 Jim ProcterJAL-2588 don’t test char==gap until we know the shader... feature/2588 tree | commitdiff
2017-08-21 Jim ProcterJAL-2588 field on overview colour finder for default... tree | commitdiff
2017-08-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-2446NCList tree | commitdiff
2017-08-18 Jim ProcterMerge branch 'feature/2588' into merge/develop_feature... tree | commitdiff
2017-08-18 kiramtJAL-2664 Adjusted colour of hidden cols/seqs tree | commitdiff
2017-08-18 kiramtJAL-2664 Correct colouring for rows tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 add GPL to main sources tree | commitdiff
2017-08-16 Jim ProcterJAL-2418 source formatting tree | commitdiff
2017-08-14 kiramtJAL-2664 Initial change to drawing hidden regions in... tree | commitdiff
2017-08-08 kiramtJAL-2587 Added progress bar to overview. Not fully... tree | commitdiff
2017-08-01 gmungocJAL-2636 draw scale marks up to second last column tree | commitdiff
2017-07-24 gmungocspike branch updated from latest features/JAL-2446 tree | commitdiff
2017-07-23 gmungocJAL-2481 JAL-2624 test for render feature below score... tree | commitdiff
2017-07-23 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-07-22 gmungocJAL-2624 check feature colour threshold when colouring... tree | commitdiff
2017-07-12 kiramtJAL-2588 Check/fix show boxes settings + unit test... tree | commitdiff
2017-07-12 kiramtJAL-2588 Added tests tree | commitdiff
2017-07-11 kiramtJAL-2588 (and JAL-2610, JAL-2603) mid refactor tree | commitdiff
2017-06-30 gmungocJAL-2526 correct treatment of contact features only... tree | commitdiff
2017-06-27 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-06-22 gmungocJAL-2481 JAL-2593 JAL-2526 further optimisation of... tree | commitdiff
2017-06-15 gmungocMerge branch 'bug/JAL-2386groupConservationColouring... tree | commitdiff
2017-06-15 kiramtMerge remote-tracking branch 'origin/develop' into... bug/JAL-2591 tree | commitdiff
2017-06-09 gmungocJAL-2446 merged to spike branch tree | commitdiff
2017-06-09 gmungocJAL-2589 render colour scheme gap colour in overview bug/JAL-2589gapColour tree | commitdiff
2017-06-09 gmungocJAL-2593 avoid redundant rendering of co-located features tree | commitdiff
2017-06-08 kiramtJAL-2588 Consistent gap colour when in None colour... tree | commitdiff
2017-06-08 gmungocJAL-2386 JAL-2570 use ResidueShader copy constructor... bug/JAL-2386groupConservationColouring tree | commitdiff
2017-06-08 kiramtJAL-2591 Made redraw flag in OverviewRenderer volatile tree | commitdiff
2017-06-08 kiramtJAL-2591 made redraw volatile tree | commitdiff
2017-06-07 kiramtJAL-2591 Overview window update interrupts tree | commitdiff
2017-06-07 kiramtJAL-2591 Increased granularity of overview panel update... tree | commitdiff
2017-06-01 gmungocJAL-2754 Sequence.findFeatures(fromCol, toCol) features/JAL-2754findFeaturesByColumn tree | commitdiff
2017-05-31 gmungocJAL-2574 preparation for Sequence.findFeatures(col1... tree | commitdiff
2017-05-29 gmungocJAL-2526 Sequence.findPositions to get residue position... tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-15 kiramtJAL-2388 Add missed optimisation tree | commitdiff
2017-05-15 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-05-12 gmungocJAL-2480 efficient test for features present on sequence tree | commitdiff
2017-04-26 gmungocJAL-2490 findFeaturesAtRes with performant feature... tree | commitdiff
2017-04-26 kiramtJAL-2388 Tidies and unit tests tree | commitdiff
2017-04-25 kiramtJAL-2388 Reverted and re-did applet changes tree | commitdiff
2017-04-25 kiramtJAL-2388 Tidies and other corrections so applet compiles tree | commitdiff
2017-04-25 kiramtJAL-2388 Updated applet to show/hide hidden regions... tree | commitdiff
2017-04-24 kiramtJAL-2388 Hidden cols separated from column selection... tree | commitdiff
2017-03-22 gmungocJAL-2446 optimised new method to find feature colour... tree | commitdiff
2017-03-22 gmungocMerge branch 'develop' into features/JAL-2446NCList tree | commitdiff
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-03-21 gmungocMerge branch 'develop' into features/JAL-2446NCList features/JAL-653_JAL-1766_htslib_refseqsupport tree | commitdiff
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence... tree | commitdiff
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