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Merge branch 'develop' into bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3
[jalview.git]
/
src
/
jalview
/
renderer
/
2018-03-21
gmungoc
JAL-2929 use configure Overview gap colour instead...
tree
|
commitdiff
2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
tree
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commitdiff
2018-02-06
kiramt
Merge branch 'develop' into feature/JAL-2759
feature/JAL-2759
tree
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commitdiff
2018-01-22
kiramt
JAL-2579 Moved locateVisibleStartOfSequence to Sequence...
tree
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commitdiff
2018-01-15
kiramt
JAL-2759 Rename findColumnPosition and adjustForHiddenC...
tree
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commitdiff
2018-01-10
gmungoc
JAL-1793 update spike branch to latest
tree
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commitdiff
2017-12-05
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
tree
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commitdiff
2017-11-20
kiramt
JAL-2759 reinstate change from develop (JAL-2636) someh...
tree
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commitdiff
2017-11-10
kiramt
JAL-2827 related fixes for stem and non-canonical annot...
bug/JAL-2827
tree
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commitdiff
2017-11-09
kiramt
JAL-2827 Fix notched repaint of helix annotation when...
tree
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commitdiff
2017-11-08
kiramt
Merge branch 'develop' into feature/JAL-2759
tree
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commitdiff
2017-11-07
gmungoc
JAL-2069 update spike branch with latest
tree
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commitdiff
2017-11-07
gmungoc
JAL-2816 tweaks to feature visibility checks
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 spike updated with latest
tree
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commitdiff
2017-11-02
gmungoc
JAL-2808 feature filters held on FeatureRenderer, getCo...
tree
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commitdiff
2017-10-24
gmungoc
JAL-2738 update spike branch with latest
tree
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commitdiff
2017-10-23
Jim Procter
Merge branch 'bug/JAL-2609attemptedmerge' into develop
tree
|
commitdiff
2017-10-20
gmungoc
Push 1793 latest to spike branch
tree
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commitdiff
2017-10-17
Jim Procter
JAL-2481 patch to fix findFeatureColour for end-of...
tree
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commitdiff
2017-10-10
kiramt
Merge remote-tracking branch 'origin/features/JAL-2609f...
tree
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commitdiff
2017-10-09
Jim Procter
JAL-2446 remove duplicate code from pulled up method.
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 more adjustments to locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-04
kiramt
JAL-2674 Simplify locateVisibleBoundsOfSequence
tree
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commitdiff
2017-10-03
gmungoc
JAL-2738 copy to spikes/mungo
tree
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commitdiff
2017-09-20
kiramt
JAL-2674 fix up interface of locateVisibleBoundsOfSequence
tree
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commitdiff
2017-09-05
Jim Procter
Merge branch 'master' into portforward/JAL-2675_2102b1t...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'feature/JAL-2587' into documentation...
tree
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commitdiff
2017-09-04
Jim Procter
JAL-2527 move default colours for applet / application...
tree
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commitdiff
2017-09-04
Jim Procter
Merge branch 'bug/JAL-2704gapColourFading' into documen...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'feature/JAL-2587' into documentation...
tree
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commitdiff
2017-09-03
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
tree
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commitdiff
2017-08-31
kiramt
JAL-2527 Updates following code review
tree
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commitdiff
2017-08-31
gmungoc
JAL-2704 unit test for Above PID gap colour, simplified...
bug/JAL-2704gapColourFading
tree
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commitdiff
2017-08-30
gmungoc
JAL-2704 don't shade gap colour for PID/conservation
tree
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commitdiff
2017-08-30
kiramt
JAL-2527 Code comments, tidy
tree
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commitdiff
2017-08-30
kiramt
JAL-2527 Added default setting/resetting and first...
tree
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commitdiff
2017-08-30
kiramt
JAL-2527 Wired up cached values to overview
tree
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commitdiff
2017-08-30
kiramt
Merge remote-tracking branch 'origin/feature/2588'...
tree
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commitdiff
2017-08-30
kiramt
Merge branch 'feature/JAL-2664' into feature/JAL-2527
tree
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commitdiff
2017-08-29
kiramt
JAL-2664 Updates following review
feature/JAL-2664
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Removed duplicate events fired to progress bar
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Update overview progress bar while drawing...
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Progress bar sizing tweaks
tree
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commitdiff
2017-08-25
kiramt
JAL-2587 Made progress bar display before overview...
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2609fastPaintW...
tree
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commitdiff
2017-08-21
Jim Procter
JAL-2588 don’t test char==gap until we know the shader...
feature/2588
tree
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commitdiff
2017-08-21
Jim Procter
JAL-2588 field on overview colour finder for default...
tree
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commitdiff
2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
tree
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commitdiff
2017-08-18
Jim Procter
Merge branch 'feature/2588' into merge/develop_feature...
tree
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commitdiff
2017-08-18
kiramt
JAL-2664 Adjusted colour of hidden cols/seqs
tree
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commitdiff
2017-08-18
kiramt
JAL-2664 Correct colouring for rows
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 add GPL to main sources
tree
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commitdiff
2017-08-16
Jim Procter
JAL-2418 source formatting
tree
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commitdiff
2017-08-14
kiramt
JAL-2664 Initial change to drawing hidden regions in...
tree
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commitdiff
2017-08-08
kiramt
JAL-2587 Added progress bar to overview. Not fully...
tree
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commitdiff
2017-08-01
gmungoc
JAL-2636 draw scale marks up to second last column
tree
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commitdiff
2017-07-24
gmungoc
spike branch updated from latest features/JAL-2446
tree
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commitdiff
2017-07-23
gmungoc
JAL-2481 JAL-2624 test for render feature below score...
tree
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commitdiff
2017-07-23
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-07-22
gmungoc
JAL-2624 check feature colour threshold when colouring...
tree
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commitdiff
2017-07-12
kiramt
JAL-2588 Check/fix show boxes settings + unit test...
tree
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commitdiff
2017-07-12
kiramt
JAL-2588 Added tests
tree
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commitdiff
2017-07-11
kiramt
JAL-2588 (and JAL-2610, JAL-2603) mid refactor
tree
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commitdiff
2017-07-05
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
tree
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commitdiff
2017-06-30
gmungoc
JAL-2526 correct treatment of contact features only...
tree
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commitdiff
2017-06-27
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-06-22
gmungoc
JAL-2481 JAL-2593 JAL-2526 further optimisation of...
tree
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commitdiff
2017-06-15
gmungoc
Merge branch 'bug/JAL-2386groupConservationColouring...
tree
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commitdiff
2017-06-15
kiramt
Merge remote-tracking branch 'origin/develop' into...
bug/JAL-2591
tree
|
commitdiff
2017-06-11
Jim Procter
JAL-2349 scaling matrix column to annotation height
tree
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commitdiff
2017-06-11
Jim Procter
JAL-2349 min and max passed by renderer
tree
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commitdiff
2017-06-09
gmungoc
JAL-2446 merged to spike branch
tree
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commitdiff
2017-06-09
Jim Procter
Merge branch 'develop' into features/JAL-2349_matrixvis
tree
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commitdiff
2017-06-09
gmungoc
JAL-2589 render colour scheme gap colour in overview
bug/JAL-2589gapColour
tree
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commitdiff
2017-06-09
gmungoc
JAL-2593 avoid redundant rendering of co-located features
tree
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commitdiff
2017-06-08
kiramt
JAL-2588 Consistent gap colour when in None colour...
tree
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commitdiff
2017-06-08
gmungoc
JAL-2386 JAL-2570 use ResidueShader copy constructor...
bug/JAL-2386groupConservationColouring
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 Made redraw flag in OverviewRenderer volatile
tree
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commitdiff
2017-06-08
kiramt
JAL-2591 made redraw volatile
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Overview window update interrupts
tree
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commitdiff
2017-06-07
kiramt
JAL-2591 Increased granularity of overview panel update...
tree
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commitdiff
2017-06-01
gmungoc
JAL-2754 Sequence.findFeatures(fromCol, toCol)
features/JAL-2754findFeaturesByColumn
tree
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commitdiff
2017-05-31
gmungoc
JAL-2574 preparation for Sequence.findFeatures(col1...
tree
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commitdiff
2017-05-29
gmungoc
JAL-2526 Sequence.findPositions to get residue position...
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-15
kiramt
JAL-2388 Add missed optimisation
tree
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commitdiff
2017-05-15
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-05-12
gmungoc
JAL-2480 efficient test for features present on sequence
tree
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commitdiff
2017-04-26
gmungoc
JAL-2490 findFeaturesAtRes with performant feature...
tree
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commitdiff
2017-04-26
kiramt
JAL-2388 Tidies and unit tests
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Reverted and re-did applet changes
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Tidies and other corrections so applet compiles
tree
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commitdiff
2017-04-25
kiramt
JAL-2388 Updated applet to show/hide hidden regions...
tree
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commitdiff
2017-04-24
kiramt
JAL-2388 Hidden cols separated from column selection...
tree
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commitdiff
2017-03-22
gmungoc
JAL-2446 optimised new method to find feature colour...
tree
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commitdiff
2017-03-22
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
tree
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commitdiff
2017-03-22
kiramt
Merge remote-tracking branch 'origin/develop' into
tree
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commitdiff
2017-03-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-653_JAL-1766_htslib_refseqsupport
tree
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commitdiff
2017-03-21
gmungoc
JAL-2438 removed (non-functional) lastSeq, lastSequence...
tree
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commitdiff
2017-03-20
gmungoc
JAL-2446 FeatureStore with NCList - work in progress
tree
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commitdiff
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