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patch to fix occasional arrayoutofbounds exception when working with hidden columns...
[jalview.git] / src / jalview / schemes /
2009-03-17 jprocterholds shading and range parameters rendering a feature... tree | commitdiff
2009-03-17 jprocterfixes launchApp bug where user defined colourscheme... tree | commitdiff
2008-11-12 jproctergracefully translate ambigous nucleotides as 'X' tree | commitdiff
2008-11-04 jprocterbugfix for transfer of user defined colourscheme from... tree | commitdiff
2008-09-04 jproctermerge from 2_4_Release branch tree | commitdiff
2008-08-11 jprocterEnsure 'None' translates into no colour scheme applied tree | commitdiff
2008-07-18 jprocterUser defined colourschemes are automatically generated... tree | commitdiff
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio... tree | commitdiff
2008-02-24 jproctersequenceId is a string, not an integer - allows generat... tree | commitdiff
2007-08-08 jprocterhistidine should be midblue (noticed by Peter Knight... tree | commitdiff
2007-04-30 jprocterdssp 7-state to three state lookup tree | commitdiff
2007-04-27 amwaterhouseAnnotation gradient will use direct colours if no graph... tree | commitdiff
2007-04-27 amwaterhouseAllow threshold to be min/max tree | commitdiff
2007-04-11 jprocterfixed base lookup bug in dna pairwise alignment and... tree | commitdiff
2007-03-19 jprocternote about selenocystine. tree | commitdiff
2007-02-27 amwaterhousecheck conservation length tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space tree | commitdiff
2007-01-30 amwaterhouseconsensusColouring never used tree | commitdiff
2006-12-06 jproctergeneral pairwise substitution score models for pairwise... tree | commitdiff
2006-12-05 amwaterhouseSequence is char [] tree | commitdiff
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence... tree | commitdiff
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence... tree | commitdiff
2006-11-14 amwaterhousewe already have c defined tree | commitdiff
2006-11-13 amwaterhouseEnable lower case colours tree | commitdiff
2006-11-09 amwaterhouseCheck conensus is not null tree | commitdiff
2006-10-12 amwaterhouseNull element checked tree | commitdiff
2006-10-10 amwaterhouseCheck on null consensus tree | commitdiff
2006-10-10 amwaterhouseaaIndex replaces aaHash tree | commitdiff
2006-10-06 amwaterhouseSet consensus as hashtble[] tree | commitdiff
2006-10-05 amwaterhouselower case available tree | commitdiff
2006-09-11 amwaterhouseComment out lower case colouring for bug fix release tree | commitdiff
2006-08-30 amwaterhouseGap added to aa3Hash tree | commitdiff
2006-08-30 amwaterhouseUser colours are case sensitive tree | commitdiff
2006-08-21 amwaterhouseheader updated tree | commitdiff
2006-06-14 amwaterhouseparseAppletParameter tree | commitdiff
2006-06-09 amwaterhousecreateColourFromName tree | commitdiff
2006-04-07 amwaterhouseMust check consensus length if autocalculate off tree | commitdiff
2006-04-05 amwaterhousepublic get methods tree | commitdiff
2006-03-24 amwaterhouseGroup colours not used tree | commitdiff
2006-03-16 amwaterhouseOut of bounds check tree | commitdiff
2006-02-16 amwaterhouseDont colour gaps tree | commitdiff
2006-02-16 amwaterhouseUse original colour scheme as base for annotation colouring tree | commitdiff
2006-02-15 amwaterhouseThreshold is a single element tree | commitdiff
2006-02-09 amwaterhouseIf conservation is zero, colour is white tree | commitdiff
2006-02-08 amwaterhouseColour above or below threshold tree | commitdiff
2006-02-03 amwaterhouseConservation colouring does what it should always have... tree | commitdiff
2006-02-03 amwaterhouseMake java 1.1 compatible tree | commitdiff
2006-01-30 amwaterhouseGet min and max colour added tree | commitdiff
2006-01-30 amwaterhouseNew files tree | commitdiff
2005-12-06 amwaterhouseafter merge tree | commitdiff
2005-11-18 jprocteradded 3 letter IUB codes for ambiguous residues/bases tree | commitdiff
2005-10-07 amwaterhousecomma separated rgb values tree | commitdiff
2005-09-22 amwaterhouseAdd nucleotide names tree | commitdiff
2005-09-15 amwaterhouseAdd Uracil as X unknown tree | commitdiff
2005-09-08 amwaterhouseIf vconsensus is null, return tree | commitdiff
2005-09-08 amwaterhouseAdd lowercase nucleotides to nucleotideHash tree | commitdiff
2005-08-30 amwaterhouseMake 24 colours to be sure tree | commitdiff
2005-08-29 amwaterhouseDefault user colour is 23 white colours tree | commitdiff
2005-08-22 amwaterhousefinalize all these hashtables tree | commitdiff
2005-08-22 amwaterhouseConservation colour scheme is no more tree | commitdiff
2005-08-18 amwaterhouseCharacter methods don't exist in java 1.1 tree | commitdiff
2005-08-18 amwaterhouseProceed with upperCase residue Release_2_03 tree | commitdiff
2005-08-18 amwaterhouseUse aa index for aboveThreshold as well as colour index tree | commitdiff
2005-08-17 amwaterhouseScheme name added tree | commitdiff
2005-08-15 amwaterhouseRemove null check tree | commitdiff
2005-08-15 amwaterhousesuper.setconsensus tree | commitdiff
2005-08-15 amwaterhousePercentage precalculated in aafrequency tree | commitdiff
2005-08-15 amwaterhouseAdd taylor to default colour check tree | commitdiff
2005-08-15 amwaterhouseHashtable now in array, not vector tree | commitdiff
2005-06-30 amwaterhouseFormatting changes tree | commitdiff
2005-06-13 amwaterhouseGet colourScheme with seqs and width tree | commitdiff
2005-06-08 amwaterhouseFormatted source tree | commitdiff
2005-06-08 amwaterhouseGPL license added tree | commitdiff
2005-05-25 amwaterhousereset colours added tree | commitdiff
2005-05-25 amwaterhouseall can threshold tree | commitdiff
2005-05-25 jproctertidied up system.out messages and moved many to stderr. tree | commitdiff
2005-05-19 amwaterhousereturns name if given colourscheme tree | commitdiff
2005-05-03 amwaterhouse1.1 compatible, formatting changes tree | commitdiff
2005-04-29 amwaterhousejust tidying up unused imports tree | commitdiff
2005-04-28 amwaterhouseno longer used tree | commitdiff
2005-04-28 amwaterhousemust set consensus in child colourscheme tree | commitdiff
2005-04-28 amwaterhouseUpdated for use by preferences panel tree | commitdiff
2005-04-15 amwaterhouseno longer used tree | commitdiff
2005-04-15 amwaterhouseconsensus held in residueColour tree | commitdiff
2005-04-14 amwaterhouseblosum colour now displayed ok tree | commitdiff
2005-04-13 jprocterFixed so that all alternate residues are used to calcul... tree | commitdiff
2005-04-11 jprocterConservation symbols : + = all props are conserved... tree | commitdiff
2005-03-23 amwaterhouseno longer used tree | commitdiff
2005-03-23 amwaterhousesecondarycolour not used tree | commitdiff
2005-03-08 amwaterhouseadd lower case residue props tree | commitdiff
2005-03-08 amwaterhouseif resIndex > 19 return color.white tree | commitdiff
2005-02-23 jprocterbug fix for unaligned sequence sets and clustal colours... tree | commitdiff
2005-02-10 amwaterhousecheck that we're not off the end of a sequence tree | commitdiff
2005-02-01 amwaterhouseNo need for drawableSequence tree | commitdiff
2005-02-01 amwaterhouseClustal colours now work tree | commitdiff
2005-01-24 amwaterhousereturns color.white if the underlying colourscheme... tree | commitdiff
2005-01-21 amwaterhouseremove a few imports tree | commitdiff
2005-01-21 amwaterhouseNucleotide colours added tree | commitdiff
2005-01-21 amwaterhouseNew colourScheme tree | commitdiff
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