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removed Iterator usage.
[jalview.git] / src / jalview / schemes /
2007-03-19 jprocternote about selenocystine. tree | commitdiff
2007-02-27 amwaterhousecheck conservation length tree | commitdiff
2007-02-07 amwaterhouseFormatting tree | commitdiff
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space tree | commitdiff
2007-01-30 amwaterhouseconsensusColouring never used tree | commitdiff
2006-12-06 jproctergeneral pairwise substitution score models for pairwise... tree | commitdiff
2006-12-05 amwaterhouseSequence is char [] tree | commitdiff
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence... tree | commitdiff
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence... tree | commitdiff
2006-11-14 amwaterhousewe already have c defined tree | commitdiff
2006-11-13 amwaterhouseEnable lower case colours tree | commitdiff
2006-11-09 amwaterhouseCheck conensus is not null tree | commitdiff
2006-10-12 amwaterhouseNull element checked tree | commitdiff
2006-10-10 amwaterhouseCheck on null consensus tree | commitdiff
2006-10-10 amwaterhouseaaIndex replaces aaHash tree | commitdiff
2006-10-06 amwaterhouseSet consensus as hashtble[] tree | commitdiff
2006-10-05 amwaterhouselower case available tree | commitdiff
2006-09-11 amwaterhouseComment out lower case colouring for bug fix release tree | commitdiff
2006-08-30 amwaterhouseGap added to aa3Hash tree | commitdiff
2006-08-30 amwaterhouseUser colours are case sensitive tree | commitdiff
2006-08-21 amwaterhouseheader updated tree | commitdiff
2006-06-14 amwaterhouseparseAppletParameter tree | commitdiff
2006-06-09 amwaterhousecreateColourFromName tree | commitdiff
2006-04-07 amwaterhouseMust check consensus length if autocalculate off tree | commitdiff
2006-04-05 amwaterhousepublic get methods tree | commitdiff
2006-03-24 amwaterhouseGroup colours not used tree | commitdiff
2006-03-16 amwaterhouseOut of bounds check tree | commitdiff
2006-02-16 amwaterhouseDont colour gaps tree | commitdiff
2006-02-16 amwaterhouseUse original colour scheme as base for annotation colouring tree | commitdiff
2006-02-15 amwaterhouseThreshold is a single element tree | commitdiff
2006-02-09 amwaterhouseIf conservation is zero, colour is white tree | commitdiff
2006-02-08 amwaterhouseColour above or below threshold tree | commitdiff
2006-02-03 amwaterhouseConservation colouring does what it should always have... tree | commitdiff
2006-02-03 amwaterhouseMake java 1.1 compatible tree | commitdiff
2006-01-30 amwaterhouseGet min and max colour added tree | commitdiff
2006-01-30 amwaterhouseNew files tree | commitdiff
2005-12-06 amwaterhouseafter merge tree | commitdiff
2005-11-18 jprocteradded 3 letter IUB codes for ambiguous residues/bases tree | commitdiff
2005-10-07 amwaterhousecomma separated rgb values tree | commitdiff
2005-09-22 amwaterhouseAdd nucleotide names tree | commitdiff
2005-09-15 amwaterhouseAdd Uracil as X unknown tree | commitdiff
2005-09-08 amwaterhouseIf vconsensus is null, return tree | commitdiff
2005-09-08 amwaterhouseAdd lowercase nucleotides to nucleotideHash tree | commitdiff
2005-08-30 amwaterhouseMake 24 colours to be sure tree | commitdiff
2005-08-29 amwaterhouseDefault user colour is 23 white colours tree | commitdiff
2005-08-22 amwaterhousefinalize all these hashtables tree | commitdiff
2005-08-22 amwaterhouseConservation colour scheme is no more tree | commitdiff
2005-08-18 amwaterhouseCharacter methods don't exist in java 1.1 tree | commitdiff
2005-08-18 amwaterhouseProceed with upperCase residue Release_2_03 tree | commitdiff
2005-08-18 amwaterhouseUse aa index for aboveThreshold as well as colour index tree | commitdiff
2005-08-17 amwaterhouseScheme name added tree | commitdiff
2005-08-15 amwaterhouseRemove null check tree | commitdiff
2005-08-15 amwaterhousesuper.setconsensus tree | commitdiff
2005-08-15 amwaterhousePercentage precalculated in aafrequency tree | commitdiff
2005-08-15 amwaterhouseAdd taylor to default colour check tree | commitdiff
2005-08-15 amwaterhouseHashtable now in array, not vector tree | commitdiff
2005-06-30 amwaterhouseFormatting changes tree | commitdiff
2005-06-13 amwaterhouseGet colourScheme with seqs and width tree | commitdiff
2005-06-08 amwaterhouseFormatted source tree | commitdiff
2005-06-08 amwaterhouseGPL license added tree | commitdiff
2005-05-25 amwaterhousereset colours added tree | commitdiff
2005-05-25 amwaterhouseall can threshold tree | commitdiff
2005-05-25 jproctertidied up system.out messages and moved many to stderr. tree | commitdiff
2005-05-19 amwaterhousereturns name if given colourscheme tree | commitdiff
2005-05-03 amwaterhouse1.1 compatible, formatting changes tree | commitdiff
2005-04-29 amwaterhousejust tidying up unused imports tree | commitdiff
2005-04-28 amwaterhouseno longer used tree | commitdiff
2005-04-28 amwaterhousemust set consensus in child colourscheme tree | commitdiff
2005-04-28 amwaterhouseUpdated for use by preferences panel tree | commitdiff
2005-04-15 amwaterhouseno longer used tree | commitdiff
2005-04-15 amwaterhouseconsensus held in residueColour tree | commitdiff
2005-04-14 amwaterhouseblosum colour now displayed ok tree | commitdiff
2005-04-13 jprocterFixed so that all alternate residues are used to calcul... tree | commitdiff
2005-04-11 jprocterConservation symbols : + = all props are conserved... tree | commitdiff
2005-03-23 amwaterhouseno longer used tree | commitdiff
2005-03-23 amwaterhousesecondarycolour not used tree | commitdiff
2005-03-08 amwaterhouseadd lower case residue props tree | commitdiff
2005-03-08 amwaterhouseif resIndex > 19 return color.white tree | commitdiff
2005-02-23 jprocterbug fix for unaligned sequence sets and clustal colours... tree | commitdiff
2005-02-10 amwaterhousecheck that we're not off the end of a sequence tree | commitdiff
2005-02-01 amwaterhouseNo need for drawableSequence tree | commitdiff
2005-02-01 amwaterhouseClustal colours now work tree | commitdiff
2005-01-24 amwaterhousereturns color.white if the underlying colourscheme... tree | commitdiff
2005-01-21 amwaterhouseremove a few imports tree | commitdiff
2005-01-21 amwaterhouseNucleotide colours added tree | commitdiff
2005-01-21 amwaterhouseNew colourScheme tree | commitdiff
2005-01-17 amwaterhouseClustalX added to ColourProperties tree | commitdiff
2005-01-14 amwaterhouseReturn color.white if a gap char is detected tree | commitdiff
2004-12-15 amwaterhousecolours are right, but not the conservation bit!! tree | commitdiff
2004-12-15 amwaterhouseno need to send sequence to determine residue colour tree | commitdiff
2004-12-15 amwaterhouseAdded for the moment, only used by ClustalxColourScheme tree | commitdiff
2004-12-15 amwaterhouseNo need to sened sequence to determine residue colour tree | commitdiff
2004-12-15 amwaterhouseisGap method implemented in utils, and optimized tree | commitdiff
2004-12-15 amwaterhouseisGap method implemented in utils tree | commitdiff
2004-12-14 amwaterhousePID Colour scheme now operational! tree | commitdiff
2004-12-14 amwaterhouseGetcolours is not needed ???? tree | commitdiff
2004-12-10 amwaterhouseNo longer exclusive to SequenceGroups tree | commitdiff
2004-12-03 amwaterhouseSpace char added tree | commitdiff
2004-12-03 amwaterhouseremove import of jbgui tree | commitdiff
2004-11-18 amwaterhousespace removed tree | commitdiff
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