AnnotationId is hashcode of object
[jalview.git] / src / jalview / schemes /
2006-12-06 jproctergeneral pairwise substitution score models for pairwise...
2006-12-05 amwaterhouseSequence is char []
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-11-28 amwaterhouseCurrentColour must not be accessed by multiple sequence...
2006-11-14 amwaterhousewe already have c defined
2006-11-13 amwaterhouseEnable lower case colours
2006-11-09 amwaterhouseCheck conensus is not null
2006-10-12 amwaterhouseNull element checked
2006-10-10 amwaterhouseCheck on null consensus
2006-10-10 amwaterhouseaaIndex replaces aaHash
2006-10-06 amwaterhouseSet consensus as hashtble[]
2006-10-05 amwaterhouselower case available
2006-09-11 amwaterhouseComment out lower case colouring for bug fix release
2006-08-30 amwaterhouseGap added to aa3Hash
2006-08-30 amwaterhouseUser colours are case sensitive
2006-08-21 amwaterhouseheader updated
2006-06-14 amwaterhouseparseAppletParameter
2006-06-09 amwaterhousecreateColourFromName
2006-04-07 amwaterhouseMust check consensus length if autocalculate off
2006-04-05 amwaterhousepublic get methods
2006-03-24 amwaterhouseGroup colours not used
2006-03-16 amwaterhouseOut of bounds check
2006-02-16 amwaterhouseDont colour gaps
2006-02-16 amwaterhouseUse original colour scheme as base for annotation colouring
2006-02-15 amwaterhouseThreshold is a single element
2006-02-09 amwaterhouseIf conservation is zero, colour is white
2006-02-08 amwaterhouseColour above or below threshold
2006-02-03 amwaterhouseConservation colouring does what it should always have...
2006-02-03 amwaterhouseMake java 1.1 compatible
2006-01-30 amwaterhouseGet min and max colour added
2006-01-30 amwaterhouseNew files
2005-12-06 amwaterhouseafter merge
2005-11-18 jprocteradded 3 letter IUB codes for ambiguous residues/bases
2005-10-07 amwaterhousecomma separated rgb values
2005-09-22 amwaterhouseAdd nucleotide names
2005-09-15 amwaterhouseAdd Uracil as X unknown
2005-09-08 amwaterhouseIf vconsensus is null, return
2005-09-08 amwaterhouseAdd lowercase nucleotides to nucleotideHash
2005-08-30 amwaterhouseMake 24 colours to be sure
2005-08-29 amwaterhouseDefault user colour is 23 white colours
2005-08-22 amwaterhousefinalize all these hashtables
2005-08-22 amwaterhouseConservation colour scheme is no more
2005-08-18 amwaterhouseCharacter methods don't exist in java 1.1
2005-08-18 amwaterhouseProceed with upperCase residue Release_2_03
2005-08-18 amwaterhouseUse aa index for aboveThreshold as well as colour index
2005-08-17 amwaterhouseScheme name added
2005-08-15 amwaterhouseRemove null check
2005-08-15 amwaterhousesuper.setconsensus
2005-08-15 amwaterhousePercentage precalculated in aafrequency
2005-08-15 amwaterhouseAdd taylor to default colour check
2005-08-15 amwaterhouseHashtable now in array, not vector
2005-06-30 amwaterhouseFormatting changes
2005-06-13 amwaterhouseGet colourScheme with seqs and width
2005-06-08 amwaterhouseFormatted source
2005-06-08 amwaterhouseGPL license added
2005-05-25 amwaterhousereset colours added
2005-05-25 amwaterhouseall can threshold
2005-05-25 jproctertidied up system.out messages and moved many to stderr.
2005-05-19 amwaterhousereturns name if given colourscheme
2005-05-03 amwaterhouse1.1 compatible, formatting changes
2005-04-29 amwaterhousejust tidying up unused imports
2005-04-28 amwaterhouseno longer used
2005-04-28 amwaterhousemust set consensus in child colourscheme
2005-04-28 amwaterhouseUpdated for use by preferences panel
2005-04-15 amwaterhouseno longer used
2005-04-15 amwaterhouseconsensus held in residueColour
2005-04-14 amwaterhouseblosum colour now displayed ok
2005-04-13 jprocterFixed so that all alternate residues are used to calcul...
2005-04-11 jprocterConservation symbols : + = all props are conserved...
2005-03-23 amwaterhouseno longer used
2005-03-23 amwaterhousesecondarycolour not used
2005-03-08 amwaterhouseadd lower case residue props
2005-03-08 amwaterhouseif resIndex > 19 return color.white
2005-02-23 jprocterbug fix for unaligned sequence sets and clustal colours...
2005-02-10 amwaterhousecheck that we're not off the end of a sequence
2005-02-01 amwaterhouseNo need for drawableSequence
2005-02-01 amwaterhouseClustal colours now work
2005-01-24 amwaterhousereturns color.white if the underlying colourscheme...
2005-01-21 amwaterhouseremove a few imports
2005-01-21 amwaterhouseNucleotide colours added
2005-01-21 amwaterhouseNew colourScheme
2005-01-17 amwaterhouseClustalX added to ColourProperties
2005-01-14 amwaterhouseReturn color.white if a gap char is detected
2004-12-15 amwaterhousecolours are right, but not the conservation bit!!
2004-12-15 amwaterhouseno need to send sequence to determine residue colour
2004-12-15 amwaterhouseAdded for the moment, only used by ClustalxColourScheme
2004-12-15 amwaterhouseNo need to sened sequence to determine residue colour
2004-12-15 amwaterhouseisGap method implemented in utils, and optimized
2004-12-15 amwaterhouseisGap method implemented in utils
2004-12-14 amwaterhousePID Colour scheme now operational!
2004-12-14 amwaterhouseGetcolours is not needed ????
2004-12-10 amwaterhouseNo longer exclusive to SequenceGroups
2004-12-03 amwaterhouseSpace char added
2004-12-03 amwaterhouseremove import of jbgui
2004-11-18 amwaterhousespace removed
2004-11-16 amwaterhouseremove jbgui import
2004-11-16 amwaterhouseremove system.out
2004-11-16 amwaterhouseAdd only colours that currently work
2004-11-16 amwaterhousenew file
2004-11-04 amwaterhouseremoved import jbgui line
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