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JAL-2376 copied out patch from Phyre branch
[jalview.git] / src / jalview / viewmodel /
2017-03-31 gmungocMerge branch 'develop' into bug/JAL-2431splitFrameNewView bug/JAL-2431splitFrameNewView tree | commitdiff
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into tree | commitdiff
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... tree | commitdiff
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions tree | commitdiff
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code tree | commitdiff
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... tree | commitdiff
2017-03-16 kiramtJAL-2439 Out-by-one in setting endRes/endSeq tree | commitdiff
2017-03-15 gmungocJAL-2431 show cDNA consensus after New View in split... tree | commitdiff
2017-03-15 kiramtJAL-2388 Unit tests and tidies tree | commitdiff
2017-03-14 kiramtJAL-2388 Working overview panel tree | commitdiff
2017-03-14 gmungocJAL-2438 Javadoc updates tree | commitdiff
2017-03-14 gmungocJAL-2438 comment/Javadoc tidies tree | commitdiff
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... tree | commitdiff
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie... tree | commitdiff
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further... tree | commitdiff
2017-03-07 kiramtJAL-2388 Additional unit tests tree | commitdiff
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-03-06 kiramtJAL-2388 Dependency tidy tree | commitdiff
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui... tree | commitdiff
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... tree | commitdiff
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... tree | commitdiff
2017-03-01 kiramtJAL-2388 Reverted to previous tree | commitdiff
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... tree | commitdiff
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile tree | commitdiff
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... tree | commitdiff
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... tree | commitdiff
2017-02-27 kiramtJAL-2388 Minor refactoring tree | commitdiff
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow tree | commitdiff
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop tree | commitdiff
2017-02-10 gmungocJAL-2371 small move of code, typo correction tree | commitdiff
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into... tree | commitdiff
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel tree | commitdiff
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory tree | commitdiff
2017-02-09 gmungocJAL-2405 set initial selection group alignment context tree | commitdiff
2017-02-08 gmungocJAL-2405 set context on selection group for tailored... tree | commitdiff
2017-02-07 gmungocJAL-2397 flag provided for 2.10.1 PCA gap calculation... tree | commitdiff
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA... tree | commitdiff
2017-01-31 gmungocJAL-2371 commented code removed only tree | commitdiff
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS... tree | commitdiff
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane... tree | commitdiff
2017-01-27 gmungocJAL-2379 commented out code removed tree | commitdiff
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader... tree | commitdiff
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1 tree | commitdiff
2017-01-23 gmungocJAL-2386 unit tests for change colour (and minor refact... tree | commitdiff
2017-01-23 gmungocJAL-2386 simplify changeColour (doesn't change colour... tree | commitdiff
2017-01-17 gmungocJAL-2379 use SparseMatrix for encoded sequences, tidy... tree | commitdiff
2017-01-04 gmungocJAL-2371 CollectionColourScheme wraps ColourSchemeI tree | commitdiff
2016-12-20 gmungocJAL-2360 ColourSchemes holds configured schemes, AlignF... tree | commitdiff
2016-12-16 gmungocJAL-2360 refactoring for JalviewColourScheme enum, tree | commitdiff
2016-12-04 Jim ProcterJAL-1933 switch from gap count to occupancy tree | commitdiff
2016-12-02 gmungocJAL-1933 gap value as description; minor formatting tree | commitdiff
2016-12-01 Jim ProcterJAL-1933 basic hack to get gap counts shown as an annot... tree | commitdiff
2016-11-23 Jim ProcterMerge branch 'bug/JAL-2323disulfideOverview' into develop tree | commitdiff
2016-11-22 Jim ProcterMerge branch 'features/JAL-1738_JAL-345_selectionfromhi... tree | commitdiff
2016-11-21 Jim ProcterJAL-2335 patched FeatureRendererModel.findFeaturesAtRes... bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-21 gmungocMerge branch 'develop' into bug/JAL-2323disulfideOverview tree | commitdiff
2016-11-17 gmungocJAL-98 ProfilesI container for profiles for columns tree | commitdiff
2016-11-16 gmungocJAL-2323 render disulfide bond correctly on overview... tree | commitdiff
2016-11-02 gmungocJAL-98 JAL-1854 encapsulate 'magic number' threshold... tree | commitdiff
2016-11-02 gmungocJAL-98 ProfileI interface for Profile tree | commitdiff
2016-11-02 gmungocJAL-98 Profile and ResidueCount moved from analysis... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 SearchResultsI now on viewmodels.AlignmentViewp... tree | commitdiff
2016-10-28 Jim ProcterJAL-966 JAL-1738 JAL-345 interfaces for SearchResults... tree | commitdiff
2016-10-26 gmungocMerge branch 'bug/JAL-98consensusMemory' into develop tree | commitdiff
2016-10-26 gmungocJAL-98 null reference to globalColourScheme as it has... tree | commitdiff
2016-10-25 Jim ProcterJAL-2089 patch broken merge to master for Release 2... releases/Release_2_10_0_Branch tree | commitdiff
2016-10-24 Jim ProcterMerge branch 'releases/Release_2_10_0_Branch' tree | commitdiff
2016-10-24 gmungocJAL-2283 set 'by conservation' correctly when changing... tree | commitdiff
2016-10-06 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory tree | commitdiff
2016-10-06 Jim ProcterJAL-2089 Merge branch releases/Release_2_10_Branch... tree | commitdiff
2016-10-05 Jim ProcterJAL-2189 source formatting tree | commitdiff
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... tree | commitdiff
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... tree | commitdiff
2016-09-22 gmungocJAL-2216 new dispose() method to null references tree | commitdiff
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not... tree | commitdiff
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... tree | commitdiff
2016-09-07 Jim ProcterMerge branch 'develop' into bug/JAL-1803_JAL-2157 tree | commitdiff
2016-09-06 gmungocJAL-2147 additional test coverage for findMappingsForSe... tree | commitdiff
2016-09-01 Jim ProcterJAL-2034 check context of selection group to catch... tree | commitdiff
2016-08-31 Jim ProcterJAL-2034 moved ‘isDefinedGroup’ flag to a test method... tree | commitdiff
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus tree | commitdiff
2016-07-18 Jim ProcterMerge branch 'features/JAL-2068groovyAnnotationWorker... tree | commitdiff
2016-07-14 Jim Procterfix for JAL-2147 tree | commitdiff
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport tree | commitdiff
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array tree | commitdiff
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... tree | commitdiff
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-2068groovyAnno... features/JAL-2068groovyAnnotationWorker tree | commitdiff
2016-06-02 tcofoegbuJAL-1944 java doc update and minor house keeping tree | commitdiff
2016-06-01 tcofoegbuJAL-1944 updated bugfix implementation tree | commitdiff
2016-05-31 tcofoegbuJAL-1944 fix for visible seqs sometimes been replaced... tree | commitdiff
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... tree | commitdiff
2016-05-10 gmungocMerge branch 'develop' into features/JAL-1956_featureStyles tree | commitdiff
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly tree | commitdiff
2016-05-03 gmungocJAL-2068 minimised jalview.gui imports, test for remove... tree | commitdiff
2016-04-27 Jim ProcterJAL-2085 JAL-2086 fix hiddenRepSequence and new referen... tree | commitdiff
2016-04-14 gmungocJAL-1421 typed map / lists, explicit imports, method... tree | commitdiff
2016-04-04 Jim ProcterJAL-969 refactor columnselection operation (during... tree | commitdiff
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset tree | commitdiff
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... tree | commitdiff
2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests tree | commitdiff
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